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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1963 1gux_A)  (  461 1bu2_A)     0.5986   0.9823   8.3501 (   0   13   15)   0     0.5986   0.9823   10   6
( 1963 1gux_A)  (  462 1bu2_A)     0.5000   0.8331   3.4565 (   0    9   10)   0     0.5000   0.8331   10   6
( 1963 1gux_A)  ( 1405 1f5q_B)     0.5993   0.8533   6.8572 (   0   13   15)   0     0.6937   0.9649   10   7
( 1963 1gux_A)  ( 1406 1f5q_B)     0.5000   0.7140   4.4544 (   0    9   10)   0     0.5000   0.7140   10   7
( 1963 1gux_A)  ( 1710 1g3n_C)     0.6000   0.8570   3.1663 (   0   13   15)   0     0.6000   0.8570   10   7
( 1963 1gux_A)  ( 1963 1gux_A)     1.0000   1.0000   0.0000 (   0   39   45)   0     1.0000   1.0000   10  10
( 1963 1gux_A)  ( 1964 1gux_B)     0.3998   0.4995   8.0618 (   0    5    6)   0     0.4998   0.6245   10   8
( 1963 1gux_A)  ( 2077 1h4l_D)     0.4999   0.7134   5.9092 (   0    8   10)   0     0.5224   0.7134   10   7
( 1963 1gux_A)  ( 2949 1jkw  )     0.5998   0.9970   5.3006 (   0   13   15)   0     0.5998   0.9970   10   6
( 1963 1gux_A)  ( 2950 1jkw  )     0.5000   0.7142   3.4495 (   0    9   10)   0     0.5000   0.7142   10   7
( 1963 1gux_A)  ( 6267 1vin  )     0.6000   0.8570   2.7854 (   0   14   15)   0     0.6000   0.8570   10   7
( 1963 1gux_A)  ( 6268 1vin  )     0.4999   0.7139   4.7057 (   0    8   10)   0     0.4999   0.7139   10   7

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