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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1964 1gux_B)  (  461 1bu2_A)     0.6245   0.8311   6.1565 (   0    9   10)   0     0.6245   0.8311    8   6
( 1964 1gux_B)  (  462 1bu2_A)     0.6247   0.8322   5.2023 (   0    9   10)   0     0.6247   0.8322    8   6
( 1964 1gux_B)  ( 1405 1f5q_B)     0.6248   0.7140   4.5656 (   0    9   10)   0     0.6248   0.7140    8   7
( 1964 1gux_B)  ( 1406 1f5q_B)     0.6245   0.7133   6.0551 (   0    9   10)   0     0.6245   0.7133    8   7
( 1964 1gux_B)  ( 1710 1g3n_C)     0.6243   0.7130   6.5501 (   0    8   10)   0     0.6243   0.7130    8   7
( 1964 1gux_B)  ( 1963 1gux_A)     0.6248   0.4999   4.6602 (   0   10   10)   0     0.6248   0.4999    8  10
( 1964 1gux_B)  ( 1964 1gux_B)     1.0000   1.0000   0.0000 (   0   25   28)   0     1.0000   1.0000    8   8
( 1964 1gux_B)  ( 2077 1h4l_D)     0.6242   0.7127   6.8986 (   0    9   10)   0     0.6242   0.7127    8   7
( 1964 1gux_B)  ( 2949 1jkw  )     0.6247   0.8319   5.4986 (   0    8   10)   0     0.6247   0.8319    8   6
( 1964 1gux_B)  ( 2950 1jkw  )     0.6248   0.7139   4.8482 (   0    9   10)   0     0.6248   0.7139    8   7
( 1964 1gux_B)  ( 6267 1vin  )     0.6243   0.7129   6.6815 (   0    9   10)   0     0.6243   0.7129    8   7
( 1964 1gux_B)  ( 6268 1vin  )     0.7484   0.8541   6.4788 (   0   12   15)   0     0.7484   0.8541    8   7

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