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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2077 1h4l_D)  (  461 1bu2_A)     0.7100   0.8243   8.8324 (   0    9   10)   0     0.7100   0.8243    7   6
( 2077 1h4l_D)  (  462 1bu2_A)     0.5714   0.6666   2.7689 (   0    6    6)   0     0.5714   0.6666    7   6
( 2077 1h4l_D)  ( 1405 1f5q_B)     0.7118   0.7118   7.7215 (   0    7   10)   0     0.7118   0.7118    7   7
( 2077 1h4l_D)  ( 1406 1f5q_B)     0.5714   0.5714   3.4764 (   0    6    6)   0     0.5714   0.5714    7   7
( 2077 1h4l_D)  ( 1710 1g3n_C)     0.7097   0.7097   9.0158 (   0    7   10)   0     0.7903   0.7903    7   7
( 2077 1h4l_D)  ( 1963 1gux_A)     0.7134   0.4999   5.9092 (   0    8   10)   0     0.7134   0.5224    7  10
( 2077 1h4l_D)  ( 1964 1gux_B)     0.7127   0.6242   6.8986 (   0    9   10)   0     0.7127   0.6242    7   8
( 2077 1h4l_D)  ( 2077 1h4l_D)     1.0000   1.0000   0.0000 (   0   20   21)   0     1.0000   1.0000    7   7
( 2077 1h4l_D)  ( 2949 1jkw  )     0.7125   0.8296   7.0562 (   0    8   10)   0     0.7125   0.8296    7   6
( 2077 1h4l_D)  ( 2950 1jkw  )     0.7079   0.7079   9.7765 (   0    8   10)   0     0.7079   0.7079    7   7
( 2077 1h4l_D)  ( 6267 1vin  )     0.7116   0.7116   7.8580 (   0    8   10)   0     0.8077   0.8077    7   7
( 2077 1h4l_D)  ( 6268 1vin  )     0.6315   0.6315   4.2736 (   1    8   10)   0     0.6315   0.6315    7   7

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