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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2949 1jkw  )  (  461 1bu2_A)     0.9724   0.9724   9.3862 (   0   13   15)   0     0.9724   0.9724    6   6
( 2949 1jkw  )  (  462 1bu2_A)     0.8324   0.8324   5.0114 (   0    8   10)   0     0.8324   0.8324    6   6
( 2949 1jkw  )  ( 1405 1f5q_B)     0.9855   0.8503   7.9283 (   0   13   15)   0     0.9855   0.8503    6   7
( 2949 1jkw  )  ( 1406 1f5q_B)     0.8317   0.7135   5.7147 (   0    8   10)   0     0.8317   0.7135    6   7
( 2949 1jkw  )  ( 1710 1g3n_C)     0.9976   0.8560   5.0325 (   0   14   15)   0     0.9976   0.8560    6   7
( 2949 1jkw  )  ( 1963 1gux_A)     0.9970   0.5998   5.3006 (   0   13   15)   0     0.9970   0.5998    6  10
( 2949 1jkw  )  ( 1964 1gux_B)     0.8319   0.6247   5.4986 (   0    8   10)   0     0.8319   0.6247    6   8
( 2949 1jkw  )  ( 2077 1h4l_D)     0.8296   0.7125   7.0562 (   0    8   10)   0     0.8296   0.7125    6   7
( 2949 1jkw  )  ( 2949 1jkw  )     1.0000   1.0000   0.0000 (   0   14   15)   0     1.0000   1.0000    6   6
( 2949 1jkw  )  ( 2950 1jkw  )     0.8327   0.7140   4.5149 (   0    8   10)   0     0.8327   0.7140    6   7
( 2949 1jkw  )  ( 6267 1vin  )     0.9825   0.8489   8.3250 (   0   13   15)   0     0.9825   0.8489    6   7
( 2949 1jkw  )  ( 6268 1vin  )     0.8318   0.7136   5.6368 (   0    8   10)   0     0.8318   0.7136    6   7

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