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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  461 1bu2_A)  (  461 1bu2_A)     1.0000   1.0000   0.0000 (   0   14   15)   0     1.0000   1.0000    6   6
(  461 1bu2_A)  (  462 1bu2_A)     0.8331   0.8331   3.3492 (   0    9   10)   0     0.8331   0.8331    6   6
(  461 1bu2_A)  ( 1405 1f5q_B)     0.9994   0.8569   3.5160 (   0   12   15)   0     0.9994   0.8569    6   7
(  461 1bu2_A)  ( 1406 1f5q_B)     0.8330   0.7141   3.9357 (   0    9   10)   0     0.8330   0.7141    6   7
(  461 1bu2_A)  ( 1710 1g3n_C)     0.9999   0.8571   2.4169 (   0   12   15)   0     0.9999   0.8571    6   7
(  461 1bu2_A)  ( 1963 1gux_A)     0.9823   0.5986   8.3501 (   0   13   15)   0     0.9823   0.5986    6  10
(  461 1bu2_A)  ( 1964 1gux_B)     0.8311   0.6245   6.1565 (   0    9   10)   0     0.8311   0.6245    6   8
(  461 1bu2_A)  ( 2077 1h4l_D)     0.8243   0.7100   8.8324 (   0    9   10)   0     0.8243   0.7100    6   7
(  461 1bu2_A)  ( 2949 1jkw  )     0.9724   0.9724   9.3862 (   0   13   15)   0     0.9724   0.9724    6   6
(  461 1bu2_A)  ( 2950 1jkw  )     0.8332   0.7142   2.7430 (   0    9   10)   0     0.8332   0.7142    6   7
(  461 1bu2_A)  ( 6267 1vin  )     0.9999   0.8571   2.2835 (   0   13   15)   0     0.9999   0.8571    6   7
(  461 1bu2_A)  ( 6268 1vin  )     0.8329   0.7141   4.1421 (   0    8   10)   0     0.8329   0.7141    6   7

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