------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 782 1dbh_A) ( 487 1by1_A) 0.6279 0.8303 4.8360 ( 2 23 36) 0 0.6279 0.8303 14 10 ( 782 1dbh_A) ( 782 1dbh_A) 1.0000 1.0000 0.0000 ( 0 82 91) 0 1.0000 1.0000 14 14 ( 782 1dbh_A) ( 1408 1f5x_A) 0.5364 0.5864 5.0998 ( 3 19 36) 0 0.6564 0.7593 14 11 ( 782 1dbh_A) ( 1592 1foe_A) 0.6894 0.8357 5.4983 ( 2 23 45) 0 0.6894 0.8357 14 11 ( 782 1dbh_A) ( 3310 1ki1_B) 0.6059 0.7901 7.2529 ( 2 18 36) 0 0.6059 0.7901 14 9 ( 782 1dbh_A) ( 3483 1kz7_A) 0.5208 0.6440 7.3890 ( 3 21 28) 0 0.5208 0.6630 14 9 -------------------------------------------------------------------------------------------------------------------------