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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  194 1aru  )  (  194 1aru  )     1.0000   1.0000   0.0000 (   0   69   78)   0     1.0000   1.0000   13  13
(  194 1aru  )  ( 1990 1gwu_A)     0.7692   0.6666   2.8272 (   0   40   45)   0     0.7692   0.6666   13  15
(  194 1aru  )  ( 2832 1jdr_A)     0.7692   0.7143   2.0912 (   0   40   45)   0     0.7692   0.7143   13  14
(  194 1aru  )  ( 4061 1mwv_A)     0.7692   0.7142   2.9042 (   0   39   45)   0     0.7692   0.7142   13  14
(  194 1aru  )  ( 4062 1mwv_A)     0.7692   0.7143   2.5184 (   0   40   45)   0     0.7692   0.7143   13  14
(  194 1aru  )  ( 4578 1oaf_A)     0.7646   0.9834   1.8548 (   2   39   45)   0     0.7646   0.9834   13  10
(  194 1aru  )  ( 5206 1q4g_A)     0.3076   0.1379   8.3795 (   0    4    6)   0     0.4026   0.2521   13  29

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