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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2832 1jdr_A)  (  194 1aru  )     0.7143   0.7692   2.0912 (   0   40   45)   0     0.7143   0.7692   14  13
( 2832 1jdr_A)  ( 1990 1gwu_A)     0.7143   0.6667   2.2169 (   0   41   45)   0     0.7499   0.7073   14  15
( 2832 1jdr_A)  ( 2832 1jdr_A)     1.0000   1.0000   0.0000 (   0   83   91)   0     1.0000   1.0000   14  14
( 2832 1jdr_A)  ( 4061 1mwv_A)     0.8555   0.8555   1.6398 (   2   58   66)   0     0.8555   0.8555   14  14
( 2832 1jdr_A)  ( 4062 1mwv_A)     0.8556   0.8556   3.1399 (   2   60   66)   0     0.8556   0.8556   14  14
( 2832 1jdr_A)  ( 4578 1oaf_A)     0.7114   0.9849   1.6042 (   2   40   45)   0     0.7114   0.9849   14  10
( 2832 1jdr_A)  ( 5206 1q4g_A)     0.2857   0.1379   9.0447 (   0    4    6)   0     0.3824   0.2843   14  29

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