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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3820 1m3q_A)  ( 3274 1kea_A)     0.7692   0.7692   2.3411 (   0   37   45)   0     0.7692   0.7692   13  13
( 3820 1m3q_A)  ( 3672 1lmz_A)     0.6146   0.8843   3.9255 (   1   24   28)   0     0.6146   0.8843   13   9
( 3820 1m3q_A)  ( 3820 1m3q_A)     1.0000   1.0000   0.0000 (   0   69   78)   0     1.0000   1.0000   13  13
( 3820 1m3q_A)  ( 4003 1mpg_A)     0.7688   0.9082   2.8393 (   1   38   45)   0     0.7688   0.9082   13  11
( 3820 1m3q_A)  ( 4042 1mun  )     0.7636   0.8249   2.4502 (   2   37   45)   0     0.7636   0.8249   13  12
( 3820 1m3q_A)  ( 4242 1ngn_A)     0.5362   0.8509   4.1210 (   1   15   21)   0     0.5362   0.8509   13   8
( 3820 1m3q_A)  ( 4764 1orn_A)     0.7641   0.8258   2.1148 (   2   38   45)   0     0.7641   0.8258   13  12
( 3820 1m3q_A)  ( 5108 1pu6_A)     0.8418   0.8418   3.1316 (   2   45   55)   0     0.8418   0.8418   13  13

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