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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4242 1ngn_A)  ( 3274 1kea_A)     0.8440   0.5355   4.1536 (   1   14   21)   0     0.8440   0.5355    8  13
( 4242 1ngn_A)  ( 3672 1lmz_A)     0.7499   0.6666   3.4133 (   0   12   15)   0     0.7499   0.6666    8   9
( 4242 1ngn_A)  ( 3820 1m3q_A)     0.8509   0.5362   4.1210 (   1   15   21)   0     0.8509   0.5362    8  13
( 4242 1ngn_A)  ( 4003 1mpg_A)     0.8744   0.6362   4.1216 (   0   16   21)   0     0.8744   0.6362    8  11
( 4242 1ngn_A)  ( 4042 1mun  )     0.7500   0.5000   1.6034 (   0   12   15)   0     0.7500   0.5286    8  12
( 4242 1ngn_A)  ( 4242 1ngn_A)     1.0000   1.0000   0.0000 (   0   21   28)   0     1.0000   1.0000    8   8
( 4242 1ngn_A)  ( 4764 1orn_A)     0.7238   0.4963   1.3071 (   1   12   15)   0     0.7238   0.5395    8  12
( 4242 1ngn_A)  ( 5108 1pu6_A)     0.8435   0.5355   4.9412 (   1   14   21)   0     0.8435   0.5355    8  13

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