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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4764 1orn_A)  ( 3274 1kea_A)     0.9789   0.9087   2.4770 (   3   55   66)   0     0.9789   0.9087   12  13
( 4764 1orn_A)  ( 3672 1lmz_A)     0.3333   0.4442   7.7492 (   0    5    6)   0     0.4632   0.5555   12   9
( 4764 1orn_A)  ( 3820 1m3q_A)     0.8258   0.7641   2.1148 (   2   38   45)   0     0.8258   0.7641   12  13
( 4764 1orn_A)  ( 4003 1mpg_A)     0.9161   0.9991   3.1599 (   1   47   55)   0     0.9161   0.9991   12  11
( 4764 1orn_A)  ( 4042 1mun  )     0.9319   0.9319   3.0351 (   4   53   66)   0     0.9319   0.9319   12  12
( 4764 1orn_A)  ( 4242 1ngn_A)     0.5395   0.6731   3.9815 (   2   15   21)   0     0.5395   0.7238   12   8
( 4764 1orn_A)  ( 4764 1orn_A)     1.0000   1.0000   0.0000 (   0   59   66)   0     1.0000   1.0000   12  12
( 4764 1orn_A)  ( 5108 1pu6_A)     0.8915   0.8289   2.8898 (   3   47   55)   0     0.8915   0.8289   12  13

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