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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  350 1bd7_A)  (  350 1bd7_A)     1.0000   1.0000   0.0000 (   0  111  136)   0     1.0000   1.0000   17  17
(  350 1bd7_A)  (  498 1c01_A)     0.3529   0.8571   1.9144 (   0    8   15)   0     0.4089   0.8571   17   7
(  350 1bd7_A)  ( 1824 1gh5_A)     0.4118   0.9999   2.2825 (   0    7   21)   0     0.4118   0.9999   17   7
(  350 1bd7_A)  ( 2074 1h4a_X)     0.4601   0.7653   1.3325 (   2   17   28)   0     0.4601   0.8750   17   8
(  350 1bd7_A)  ( 2075 1h4a_X)     0.4601   0.7653   1.5508 (   2   17   28)   0     0.4601   0.8750   17   8
(  350 1bd7_A)  ( 2181 1hdf_A)     0.4697   0.8688   2.4444 (   1   16   28)   0     0.4702   0.8803   17   9
(  350 1bd7_A)  ( 4348 1nps_A)     0.4118   0.7778   1.4268 (   0   14   21)   0     0.4319   0.7778   17   9
(  350 1bd7_A)  ( 4691 1oki_A)     0.4118   0.9999   1.5830 (   0   10   21)   0     0.4118   0.9999   17   7
(  350 1bd7_A)  ( 4692 1oki_A)     0.5291   0.9926   1.1687 (   1   24   36)   0     0.5291   0.9926   17   9
(  350 1bd7_A)  ( 6335 1wkt  )     0.3529   0.9999   2.0607 (   0    4   15)   0     0.3529   0.9999   17   6

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