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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4691 1oki_A)  (  350 1bd7_A)     0.9999   0.4118   1.5830 (   0   10   21)   0     0.9999   0.4118    7  17
( 4691 1oki_A)  (  498 1c01_A)     0.8570   0.8570   2.8302 (   0    8   15)   0     0.8570   0.8570    7   7
( 4691 1oki_A)  ( 1824 1gh5_A)     0.9998   0.9998   2.6419 (   0    7   21)   0     0.9998   0.9998    7   7
( 4691 1oki_A)  ( 2074 1h4a_X)     0.9999   0.8750   0.9421 (   0   10   21)   0     0.9999   0.8750    7   8
( 4691 1oki_A)  ( 2075 1h4a_X)     0.9999   0.8750   0.4527 (   0   10   21)   0     0.9999   0.8750    7   8
( 4691 1oki_A)  ( 2181 1hdf_A)     0.9999   0.7777   2.4441 (   0    9   21)   0     0.9999   0.7777    7   9
( 4691 1oki_A)  ( 4348 1nps_A)     0.8571   0.6667   2.2014 (   0    8   15)   0     0.9999   0.7778    7   9
( 4691 1oki_A)  ( 4691 1oki_A)     1.0000   1.0000   0.0000 (   0   11   21)   0     1.0000   1.0000    7   7
( 4691 1oki_A)  ( 4692 1oki_A)     0.9999   0.7778   1.0809 (   0    9   21)   0     0.9999   0.7778    7   9
( 4691 1oki_A)  ( 6335 1wkt  )     0.8570   0.9997   2.8841 (   0    4   15)   0     0.8570   0.9997    7   6

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