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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2843 1jey_A)  ( 2843 1jey_A)     1.0000   1.0000   0.0000 (   0  135  153)   0     1.0000   1.0000   18  18
( 2843 1jey_A)  ( 2845 1jey_B)     0.7866   0.8134   5.1284 (  10  100  120)   0     0.7866   0.8134   18  17
( 2843 1jey_A)  ( 4801 1ow1_A)     0.4443   0.5708   4.1521 (   1   23   28)   0     0.4443   0.5708   18  14

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