------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1918 1gqp_A) ( 387 1bhg_A) 0.3333 0.5554 4.9687 ( 0 5 10) 0 0.3333 0.5554 15 9 ( 1918 1gqp_A) ( 607 1ciy ) 0.5990 0.8927 5.5884 ( 1 23 36) 0 0.5990 0.8927 15 10 ( 1918 1gqp_A) ( 700 1cx1_A) 0.5332 0.7992 5.0347 ( 0 15 28) 0 0.5332 0.7992 15 10 ( 1918 1gqp_A) ( 765 1d7p_M) 0.5994 0.6910 3.4218 ( 1 24 36) 0 0.5994 0.6910 15 13 ( 1918 1gqp_A) ( 1271 1eut ) 0.5993 0.9911 4.4861 ( 1 24 36) 0 0.5993 0.9911 15 9 ( 1918 1gqp_A) ( 1884 1gny_A) 0.5998 0.6918 5.2950 ( 0 23 36) 0 0.5998 0.6918 15 13 ( 1918 1gqp_A) ( 1918 1gqp_A) 1.0000 1.0000 0.0000 ( 0 84 105) 0 1.0000 1.0000 15 15 ( 1918 1gqp_A) ( 1954 1gu3_A) 0.5331 0.8862 5.9788 ( 0 12 28) 0 0.5995 0.9941 15 9 ( 1918 1gqp_A) ( 1959 1gui_A) 0.4665 0.6358 6.1359 ( 0 8 21) 0 0.5290 0.7080 15 11 ( 1918 1gqp_A) ( 1989 1gwm_A) 0.5999 0.8179 3.7236 ( 0 19 36) 0 0.5999 0.8179 15 11 ( 1918 1gqp_A) ( 2116 1h6y_A) 0.4000 0.4999 5.7573 ( 0 4 15) 0 0.6659 0.8311 15 12 ( 1918 1gqp_A) ( 2241 1hn0_A) 0.4667 0.5833 3.7191 ( 0 11 21) 0 0.5096 0.6037 15 12 ( 1918 1gqp_A) ( 2408 1i5p_A) 0.4000 0.4999 4.9387 ( 0 7 15) 0 0.4000 0.4999 15 12 ( 1918 1gqp_A) ( 2762 1j83_A) 0.3333 0.4999 5.2470 ( 0 7 10) 0 0.5994 0.8957 15 10 ( 1918 1gqp_A) ( 2872 1jhj_A) 0.8062 0.8474 3.4493 ( 5 57 78) 0 0.8062 0.8474 15 14 ( 1918 1gqp_A) ( 2886 1ji6_A) 0.5332 0.7992 5.0300 ( 0 16 28) 0 0.5332 0.7992 15 10 ( 1918 1gqp_A) ( 3063 1ju3_A) 0.3984 0.4583 9.8617 ( 1 12 15) 0 0.5794 0.5982 15 13 ( 1918 1gqp_A) ( 3098 1jz7_A) 0.6174 0.5600 7.3938 ( 3 26 45) 0 0.6174 0.5600 15 17 ( 1918 1gqp_A) ( 3124 1k12_A) 0.7302 0.8398 3.8818 ( 2 41 55) 0 0.7302 0.8398 15 13 ( 1918 1gqp_A) ( 3157 1k3i_A) 0.4666 0.7770 5.1423 ( 0 9 21) 0 0.5990 0.9881 15 9 ( 1918 1gqp_A) ( 3170 1k45_A) 0.4000 0.5453 5.7422 ( 0 5 15) 0 0.5731 0.7170 15 11 ( 1918 1gqp_A) ( 3280 1kex_A) 0.6656 0.9923 5.9457 ( 1 30 45) 0 0.6656 0.9923 15 10 ( 1918 1gqp_A) ( 3297 1kgy_A) 0.2667 0.4000 4.4846 ( 0 3 6) 0 0.5331 0.7979 15 10 ( 1918 1gqp_A) ( 3562 1l7l_A) 0.3333 0.7134 6.0227 ( 0 2 10) 0 0.4540 0.8552 15 7 ( 1918 1gqp_A) ( 3680 1lns_A) 0.6662 0.5262 4.0859 ( 1 31 45) 0 0.6662 0.5262 15 19 ( 1918 1gqp_A) ( 4423 1nx9_A) 0.2667 0.2500 3.8533 ( 0 4 6) 0 0.5285 0.5073 15 16 ( 1918 1gqp_A) ( 4496 1o59_A) 0.6647 0.9001 4.8144 ( 1 21 45) 0 0.6647 0.9001 15 11 ( 1918 1gqp_A) ( 4497 1o59_A) 0.5333 0.8884 3.9808 ( 0 16 28) 0 0.5333 0.8884 15 9 ( 1918 1gqp_A) ( 4599 1od3_A) 0.4666 0.6995 5.1934 ( 0 10 21) 0 0.5998 0.8988 15 10 ( 1918 1gqp_A) ( 4654 1oh4_A) 0.5995 0.5995 6.3922 ( 0 24 36) 0 0.5995 0.5995 15 15 ( 1918 1gqp_A) ( 4929 1p8j_A) 0.5332 0.9971 5.2491 ( 0 16 28) 0 0.5332 0.9971 15 8 ( 1918 1gqp_A) ( 5569 1r64_A) 0.5333 0.7270 4.4931 ( 0 17 28) 0 0.5333 0.7270 15 11 ( 1918 1gqp_A) ( 6050 1umh_A) 0.5332 0.6662 5.6196 ( 0 6 28) 0 0.5332 0.6662 15 12 ( 1918 1gqp_A) ( 6140 1uxz_A) 0.6193 0.6593 4.5809 ( 5 37 55) 0 0.6193 0.6593 15 13 ( 1918 1gqp_A) ( 6347 1xna_A) 0.5333 0.7270 4.2649 ( 0 11 28) 0 0.5333 0.7270 15 11 -------------------------------------------------------------------------------------------------------------------------