------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1989 1gwm_A) ( 387 1bhg_A) 0.6333 0.7695 9.4131 ( 0 11 21) 0 0.6333 0.7695 11 9 ( 1989 1gwm_A) ( 607 1ciy ) 0.9074 0.9972 3.2223 ( 1 32 45) 0 0.9074 0.9972 11 10 ( 1989 1gwm_A) ( 700 1cx1_A) 0.6356 0.6988 6.6019 ( 0 9 21) 0 0.6356 0.6988 11 10 ( 1989 1gwm_A) ( 765 1d7p_M) 0.4544 0.3846 6.4235 ( 0 7 10) 0 0.6362 0.5384 11 13 ( 1989 1gwm_A) ( 1271 1eut ) 0.6363 0.7775 4.0271 ( 0 9 21) 0 0.7205 0.8709 11 9 ( 1989 1gwm_A) ( 1884 1gny_A) 0.9950 0.8440 5.7138 ( 1 40 55) 0 0.9950 0.8440 11 13 ( 1989 1gwm_A) ( 1918 1gqp_A) 0.8179 0.5999 3.7236 ( 0 19 36) 0 0.8179 0.5999 11 15 ( 1989 1gwm_A) ( 1954 1gu3_A) 0.8178 0.9990 4.0500 ( 0 23 36) 0 0.8178 0.9990 11 9 ( 1989 1gwm_A) ( 1959 1gui_A) 0.9076 0.9076 5.0321 ( 0 27 45) 0 0.9076 0.9076 11 11 ( 1989 1gwm_A) ( 1989 1gwm_A) 1.0000 1.0000 0.0000 ( 0 41 55) 0 1.0000 1.0000 11 11 ( 1989 1gwm_A) ( 2116 1h6y_A) 0.9826 0.9053 3.9100 ( 2 39 55) 0 0.9826 0.9053 11 12 ( 1989 1gwm_A) ( 2241 1hn0_A) 0.9058 0.8312 4.6878 ( 1 29 45) 0 0.9058 0.8312 11 12 ( 1989 1gwm_A) ( 2408 1i5p_A) 0.9063 0.8315 4.0106 ( 1 29 45) 0 0.9063 0.8315 11 12 ( 1989 1gwm_A) ( 2762 1j83_A) 0.8175 0.8989 4.6846 ( 0 23 36) 0 0.8175 0.8989 11 10 ( 1989 1gwm_A) ( 2872 1jhj_A) 0.8181 0.6428 2.9820 ( 0 19 36) 0 0.8181 0.6428 11 14 ( 1989 1gwm_A) ( 2886 1ji6_A) 0.6363 0.6999 3.8438 ( 0 12 21) 0 0.8144 0.8939 11 10 ( 1989 1gwm_A) ( 3063 1ju3_A) 0.4545 0.3846 5.0076 ( 0 2 10) 0 0.4545 0.3846 11 13 ( 1989 1gwm_A) ( 3098 1jz7_A) 0.9043 0.5877 6.0403 ( 1 31 45) 0 0.9052 0.5878 11 17 ( 1989 1gwm_A) ( 3124 1k12_A) 0.8177 0.6921 4.2070 ( 0 23 36) 0 0.8177 0.6921 11 13 ( 1989 1gwm_A) ( 3157 1k3i_A) 0.7269 0.8879 4.6471 ( 0 12 28) 0 0.7269 0.8879 11 9 ( 1989 1gwm_A) ( 3170 1k45_A) 0.9065 0.9065 5.7749 ( 0 26 45) 0 0.9065 0.9065 11 11 ( 1989 1gwm_A) ( 3280 1kex_A) 0.4542 0.4994 8.3006 ( 0 6 10) 0 0.6754 0.7028 11 10 ( 1989 1gwm_A) ( 3297 1kgy_A) 0.9085 0.9990 4.0025 ( 0 30 45) 0 0.9085 0.9990 11 10 ( 1989 1gwm_A) ( 3562 1l7l_A) 0.6017 0.7927 4.8714 ( 1 9 21) 0 0.6362 0.9981 11 7 ( 1989 1gwm_A) ( 3680 1lns_A) 0.3636 0.2105 6.3737 ( 0 1 6) 0 0.7267 0.4516 11 19 ( 1989 1gwm_A) ( 4423 1nx9_A) 0.4545 0.3125 5.0715 ( 0 2 10) 0 0.8148 0.5620 11 16 ( 1989 1gwm_A) ( 4496 1o59_A) 0.4544 0.4544 6.2384 ( 0 4 10) 0 0.7270 0.7270 11 11 ( 1989 1gwm_A) ( 4497 1o59_A) 0.7272 0.8887 3.2468 ( 0 18 28) 0 0.7272 0.8887 11 9 ( 1989 1gwm_A) ( 4599 1od3_A) 0.8136 0.8926 4.8585 ( 1 22 36) 0 0.8136 0.8926 11 10 ( 1989 1gwm_A) ( 4654 1oh4_A) 0.9969 0.7327 5.3499 ( 0 39 55) 0 0.9969 0.7327 11 15 ( 1989 1gwm_A) ( 4929 1p8j_A) 0.7271 0.9991 3.9427 ( 0 15 28) 0 0.7271 0.9991 11 8 ( 1989 1gwm_A) ( 5569 1r64_A) 0.8143 0.8143 4.6961 ( 1 23 36) 0 0.8143 0.8143 11 11 ( 1989 1gwm_A) ( 6050 1umh_A) 0.8125 0.7660 4.7441 ( 2 21 45) 0 0.8125 0.7660 11 12 ( 1989 1gwm_A) ( 6140 1uxz_A) 0.9980 0.8453 3.8596 ( 1 38 55) 0 0.9980 0.8453 11 13 ( 1989 1gwm_A) ( 6347 1xna_A) 0.7272 0.7272 3.4255 ( 0 14 28) 0 0.7272 0.7272 11 11 -------------------------------------------------------------------------------------------------------------------------