------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2762 1j83_A) ( 387 1bhg_A) 0.6990 0.7761 6.2685 ( 0 14 21) 0 0.6990 0.7761 10 9 ( 2762 1j83_A) ( 607 1ciy ) 0.8987 0.8987 4.9432 ( 0 29 36) 0 0.8987 0.8987 10 10 ( 2762 1j83_A) ( 700 1cx1_A) 0.5999 0.5999 4.5263 ( 0 11 15) 0 0.8179 0.8179 10 10 ( 2762 1j83_A) ( 765 1d7p_M) 0.4998 0.3846 6.1587 ( 0 7 10) 0 0.4998 0.4566 10 13 ( 2762 1j83_A) ( 1271 1eut ) 0.7980 0.8856 6.3111 ( 0 20 28) 0 0.7980 0.8856 10 9 ( 2762 1j83_A) ( 1884 1gny_A) 0.5994 0.4614 6.5784 ( 0 10 15) 0 0.8870 0.6887 10 13 ( 2762 1j83_A) ( 1918 1gqp_A) 0.4999 0.3333 5.2470 ( 0 7 10) 0 0.8957 0.5994 10 15 ( 2762 1j83_A) ( 1954 1gu3_A) 0.6996 0.7771 5.0268 ( 0 13 21) 0 0.8973 0.9955 10 9 ( 2762 1j83_A) ( 1959 1gui_A) 0.4998 0.4544 6.3499 ( 0 5 10) 0 0.8959 0.8156 10 11 ( 2762 1j83_A) ( 1989 1gwm_A) 0.8989 0.8175 4.6846 ( 0 23 36) 0 0.8989 0.8175 10 11 ( 2762 1j83_A) ( 2116 1h6y_A) 0.5994 0.4998 6.6614 ( 0 8 15) 0 0.7991 0.6663 10 12 ( 2762 1j83_A) ( 2241 1hn0_A) 0.8984 0.7493 5.1843 ( 0 26 36) 0 0.8984 0.7493 10 12 ( 2762 1j83_A) ( 2408 1i5p_A) 0.8988 0.7495 4.8459 ( 0 26 36) 0 0.8988 0.7495 10 12 ( 2762 1j83_A) ( 2762 1j83_A) 1.0000 1.0000 0.0000 ( 0 36 45) 0 1.0000 1.0000 10 10 ( 2762 1j83_A) ( 2872 1jhj_A) 0.7979 0.5710 6.4170 ( 0 16 28) 0 0.8971 0.6423 10 14 ( 2762 1j83_A) ( 2886 1ji6_A) 0.8990 0.8990 4.5903 ( 0 28 36) 0 0.8990 0.8990 10 10 ( 2762 1j83_A) ( 3063 1ju3_A) 0.4998 0.3846 6.0544 ( 0 6 10) 0 0.8961 0.6913 10 13 ( 2762 1j83_A) ( 3098 1jz7_A) 0.4995 0.2941 8.0438 ( 0 7 10) 0 0.8964 0.5292 10 17 ( 2762 1j83_A) ( 3124 1k12_A) 0.7989 0.6151 5.3952 ( 0 21 28) 0 0.7989 0.6151 10 13 ( 2762 1j83_A) ( 3157 1k3i_A) 0.7986 0.8866 5.7428 ( 0 17 28) 0 0.7986 0.8866 10 9 ( 2762 1j83_A) ( 3170 1k45_A) 0.5997 0.5452 5.8368 ( 0 11 15) 0 0.5997 0.5452 10 11 ( 2762 1j83_A) ( 3280 1kex_A) 0.6965 0.6965 8.6205 ( 0 14 21) 0 0.6994 0.6994 10 10 ( 2762 1j83_A) ( 3297 1kgy_A) 0.8999 0.8999 2.7763 ( 0 27 36) 0 0.8999 0.8999 10 10 ( 2762 1j83_A) ( 3562 1l7l_A) 0.4000 0.5712 5.8005 ( 0 1 6) 0 0.4997 0.7125 10 7 ( 2762 1j83_A) ( 3680 1lns_A) 0.5998 0.3158 4.9596 ( 0 10 15) 0 0.7930 0.4208 10 19 ( 2762 1j83_A) ( 4423 1nx9_A) 0.7996 0.5000 4.2190 ( 0 18 28) 0 0.7996 0.5249 10 16 ( 2762 1j83_A) ( 4496 1o59_A) 0.6997 0.6362 4.6114 ( 0 11 21) 0 0.8968 0.8162 10 11 ( 2762 1j83_A) ( 4497 1o59_A) 0.4000 0.4444 5.9641 ( 0 4 6) 0 0.6994 0.7767 10 9 ( 2762 1j83_A) ( 4599 1od3_A) 0.5236 0.5236 5.8472 ( 5 27 36) 0 0.6993 0.6993 10 10 ( 2762 1j83_A) ( 4654 1oh4_A) 0.7996 0.5333 4.1876 ( 0 23 28) 0 0.8976 0.5997 10 15 ( 2762 1j83_A) ( 4929 1p8j_A) 0.7978 0.9932 6.5234 ( 0 20 28) 0 0.7990 0.9970 10 8 ( 2762 1j83_A) ( 5569 1r64_A) 0.5000 0.4545 4.5179 ( 0 8 10) 0 0.7979 0.7260 10 11 ( 2762 1j83_A) ( 6050 1umh_A) 0.8968 0.7487 6.1342 ( 0 18 36) 0 0.8968 0.7487 10 12 ( 2762 1j83_A) ( 6140 1uxz_A) 0.8992 0.6921 4.3180 ( 0 29 36) 0 0.8992 0.6921 10 13 ( 2762 1j83_A) ( 6347 1xna_A) 0.5999 0.5454 3.8596 ( 0 8 15) 0 0.7993 0.7269 10 11 -------------------------------------------------------------------------------------------------------------------------