------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2886 1ji6_A) ( 387 1bhg_A) 0.4999 0.5555 4.5452 ( 0 7 10) 0 0.6994 0.7767 10 9 ( 2886 1ji6_A) ( 607 1ciy ) 0.9999 0.9999 2.1598 ( 0 39 45) 0 0.9999 0.9999 10 10 ( 2886 1ji6_A) ( 700 1cx1_A) 0.7955 0.7955 4.0832 ( 1 21 28) 0 0.7955 0.7955 10 10 ( 2886 1ji6_A) ( 765 1d7p_M) 0.5998 0.4615 5.0096 ( 0 10 15) 0 0.5998 0.4615 10 13 ( 2886 1ji6_A) ( 1271 1eut ) 0.6992 0.7764 5.9937 ( 0 15 21) 0 0.6992 0.7764 10 9 ( 2886 1ji6_A) ( 1884 1gny_A) 0.8971 0.6915 4.9214 ( 1 31 36) 0 0.8971 0.6915 10 13 ( 2886 1ji6_A) ( 1918 1gqp_A) 0.7992 0.5332 5.0300 ( 0 16 28) 0 0.7992 0.5332 10 15 ( 2886 1ji6_A) ( 1954 1gu3_A) 0.6739 0.7355 3.3559 ( 1 11 21) 0 0.7989 0.8871 10 9 ( 2886 1ji6_A) ( 1959 1gui_A) 0.8932 0.8139 4.1252 ( 1 22 36) 0 0.8932 0.8139 10 11 ( 2886 1ji6_A) ( 1989 1gwm_A) 0.9970 0.9072 3.5678 ( 1 32 45) 0 0.9970 0.9072 10 11 ( 2886 1ji6_A) ( 2116 1h6y_A) 0.9676 0.8198 4.4405 ( 2 33 45) 0 0.9676 0.8198 10 12 ( 2886 1ji6_A) ( 2241 1hn0_A) 0.7649 0.7073 4.4700 ( 4 34 45) 0 0.7989 0.7073 10 12 ( 2886 1ji6_A) ( 2408 1i5p_A) 0.9995 0.8331 3.3223 ( 0 35 45) 0 0.9995 0.8331 10 12 ( 2886 1ji6_A) ( 2762 1j83_A) 0.8990 0.8990 4.5903 ( 0 28 36) 0 0.8990 0.8990 10 10 ( 2886 1ji6_A) ( 2872 1jhj_A) 0.7994 0.5713 4.7689 ( 0 17 28) 0 0.7994 0.5713 10 14 ( 2886 1ji6_A) ( 2886 1ji6_A) 1.0000 1.0000 0.0000 ( 0 39 45) 0 1.0000 1.0000 10 10 ( 2886 1ji6_A) ( 3063 1ju3_A) 0.4997 0.3845 7.2791 ( 0 8 10) 0 0.4997 0.3845 10 13 ( 2886 1ji6_A) ( 3098 1jz7_A) 0.8988 0.5293 4.7812 ( 0 27 36) 0 0.9910 0.5876 10 17 ( 2886 1ji6_A) ( 3124 1k12_A) 0.7993 0.6152 4.8783 ( 0 22 28) 0 0.7993 0.6152 10 13 ( 2886 1ji6_A) ( 3157 1k3i_A) 0.5999 0.6665 4.1458 ( 0 8 15) 0 0.5999 0.6665 10 9 ( 2886 1ji6_A) ( 3170 1k45_A) 0.8986 0.8173 4.9872 ( 0 22 36) 0 0.8986 0.8173 10 11 ( 2886 1ji6_A) ( 3280 1kex_A) 0.5998 0.5998 5.2224 ( 0 8 15) 0 0.5998 0.5998 10 10 ( 2886 1ji6_A) ( 3297 1kgy_A) 0.9981 0.9981 4.7200 ( 0 34 45) 0 0.9981 0.9981 10 10 ( 2886 1ji6_A) ( 3562 1l7l_A) 0.4000 0.5714 3.1056 ( 0 0 6) 0 0.6992 0.9950 10 7 ( 2886 1ji6_A) ( 3680 1lns_A) 0.7949 0.4208 6.0246 ( 1 22 28) 0 0.9935 0.5260 10 19 ( 2886 1ji6_A) ( 4423 1nx9_A) 0.4704 0.3093 11.4667 ( 1 7 10) 0 0.8937 0.5619 10 16 ( 2886 1ji6_A) ( 4496 1o59_A) 0.7990 0.7267 5.2805 ( 0 17 28) 0 0.8905 0.8123 10 11 ( 2886 1ji6_A) ( 4497 1o59_A) 0.7984 0.8862 5.9641 ( 0 21 28) 0 0.7994 0.8879 10 9 ( 2886 1ji6_A) ( 4599 1od3_A) 0.8998 0.8998 3.2111 ( 0 29 36) 0 0.8998 0.8998 10 10 ( 2886 1ji6_A) ( 4654 1oh4_A) 0.7988 0.5332 5.5704 ( 0 22 28) 0 0.7988 0.5332 10 15 ( 2886 1ji6_A) ( 4929 1p8j_A) 0.7999 0.9996 3.2453 ( 0 20 28) 0 0.7999 0.9996 10 8 ( 2886 1ji6_A) ( 5569 1r64_A) 0.8988 0.8174 4.7882 ( 0 28 36) 0 0.8988 0.8174 10 11 ( 2886 1ji6_A) ( 6050 1umh_A) 0.4999 0.4166 5.3633 ( 0 2 10) 0 0.7335 0.6370 10 12 ( 2886 1ji6_A) ( 6140 1uxz_A) 0.9978 0.7686 3.6637 ( 1 36 45) 0 0.9978 0.7686 10 13 ( 2886 1ji6_A) ( 6347 1xna_A) 0.6999 0.6363 3.3793 ( 0 13 21) 0 0.6999 0.6363 10 11 -------------------------------------------------------------------------------------------------------------------------