------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3063 1ju3_A) ( 387 1bhg_A) 0.4720 0.5100 5.2396 ( 4 21 28) 0 0.6130 0.8743 13 9 ( 3063 1ju3_A) ( 607 1ciy ) 0.3845 0.4994 8.2730 ( 0 4 10) 0 0.6151 0.7988 13 10 ( 3063 1ju3_A) ( 700 1cx1_A) 0.3846 0.4999 5.4522 ( 0 7 10) 0 0.6790 0.8545 13 10 ( 3063 1ju3_A) ( 765 1d7p_M) 0.3839 0.3839 12.1354 ( 0 7 10) 0 0.4225 0.4225 13 13 ( 3063 1ju3_A) ( 1271 1eut ) 0.4419 0.5735 5.8157 ( 2 14 15) 0 0.5741 0.6429 13 9 ( 3063 1ju3_A) ( 1884 1gny_A) 0.7624 0.7624 4.7625 ( 2 36 45) 0 0.7624 0.7624 13 13 ( 3063 1ju3_A) ( 1918 1gqp_A) 0.4583 0.3984 9.8617 ( 1 12 15) 0 0.4583 0.3984 13 15 ( 3063 1ju3_A) ( 1954 1gu3_A) 0.3846 0.5555 3.9583 ( 0 3 10) 0 0.6147 0.8848 13 9 ( 3063 1ju3_A) ( 1959 1gui_A) 0.4614 0.5451 6.8189 ( 0 6 15) 0 0.6702 0.7278 13 11 ( 3063 1ju3_A) ( 1989 1gwm_A) 0.3846 0.4545 5.0076 ( 0 2 10) 0 0.3846 0.4545 13 11 ( 3063 1ju3_A) ( 2116 1h6y_A) 0.3846 0.4166 6.5583 ( 0 7 10) 0 0.5055 0.5158 13 12 ( 3063 1ju3_A) ( 2241 1hn0_A) 0.3846 0.4166 4.5145 ( 0 6 10) 0 0.7654 0.8276 13 12 ( 3063 1ju3_A) ( 2408 1i5p_A) 0.3846 0.4167 4.1379 ( 0 4 10) 0 0.6895 0.7459 13 12 ( 3063 1ju3_A) ( 2762 1j83_A) 0.3846 0.4998 6.0544 ( 0 6 10) 0 0.6913 0.8961 13 10 ( 3063 1ju3_A) ( 2872 1jhj_A) 0.4277 0.4041 9.5741 ( 2 12 15) 0 0.6917 0.6425 13 14 ( 3063 1ju3_A) ( 2886 1ji6_A) 0.3843 0.4990 9.5706 ( 0 5 10) 0 0.3843 0.4990 13 10 ( 3063 1ju3_A) ( 3063 1ju3_A) 1.0000 1.0000 0.0000 ( 0 68 78) 0 1.0000 1.0000 13 13 ( 3063 1ju3_A) ( 3098 1jz7_A) 0.4681 0.4415 5.1880 ( 7 34 45) 0 0.6140 0.5315 13 17 ( 3063 1ju3_A) ( 3124 1k12_A) 0.7630 0.7630 5.7826 ( 2 38 45) 0 0.7630 0.7630 13 13 ( 3063 1ju3_A) ( 3157 1k3i_A) 0.3845 0.5549 7.5690 ( 0 4 10) 0 0.6186 0.7324 13 9 ( 3063 1ju3_A) ( 3170 1k45_A) 0.4615 0.5453 5.2633 ( 0 5 15) 0 0.7641 0.8976 13 11 ( 3063 1ju3_A) ( 3280 1kex_A) 0.4612 0.5987 8.1181 ( 0 11 15) 0 0.4612 0.5987 13 10 ( 3063 1ju3_A) ( 3297 1kgy_A) 0.6918 0.8980 5.4584 ( 0 26 36) 0 0.6918 0.8980 13 10 ( 3063 1ju3_A) ( 3562 1l7l_A) 0.3077 0.5712 5.3985 ( 0 2 6) 0 0.3077 0.5712 13 7 ( 3063 1ju3_A) ( 3680 1lns_A) 0.8457 0.5789 3.4329 ( 1 45 55) 0 0.8457 0.5789 13 19 ( 3063 1ju3_A) ( 4423 1nx9_A) 0.9973 0.8115 3.3050 ( 2 65 78) 0 0.9973 0.8115 13 16 ( 3063 1ju3_A) ( 4496 1o59_A) 0.4614 0.5451 6.5451 ( 0 7 15) 0 0.4614 0.5451 13 11 ( 3063 1ju3_A) ( 4497 1o59_A) 0.6137 0.8787 6.3121 ( 1 21 28) 0 0.6137 0.8787 13 9 ( 3063 1ju3_A) ( 4599 1od3_A) 0.3846 0.4999 5.4917 ( 0 6 10) 0 0.3999 0.4999 13 10 ( 3063 1ju3_A) ( 4654 1oh4_A) 0.5380 0.4665 7.1058 ( 0 14 21) 0 0.6150 0.5331 13 15 ( 3063 1ju3_A) ( 4929 1p8j_A) 0.3845 0.6235 7.9903 ( 0 5 10) 0 0.6129 0.9729 13 8 ( 3063 1ju3_A) ( 5569 1r64_A) 0.3845 0.4542 8.0356 ( 0 4 10) 0 0.3845 0.4542 13 11 ( 3063 1ju3_A) ( 6050 1umh_A) 0.4615 0.4999 5.3950 ( 0 3 15) 0 0.4615 0.4999 13 12 ( 3063 1ju3_A) ( 6140 1uxz_A) 0.3845 0.3845 7.5581 ( 0 6 10) 0 0.6144 0.6144 13 13 ( 3063 1ju3_A) ( 6347 1xna_A) 0.3846 0.4545 4.3243 ( 0 5 10) 0 0.6150 0.7263 13 11 -------------------------------------------------------------------------------------------------------------------------