------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3124 1k12_A) ( 387 1bhg_A) 0.4614 0.6660 6.0487 ( 0 11 15) 0 0.4614 0.6660 13 9 ( 3124 1k12_A) ( 607 1ciy ) 0.6913 0.8963 5.4084 ( 1 30 36) 0 0.6915 0.8970 13 10 ( 3124 1k12_A) ( 700 1cx1_A) 0.6153 0.7996 4.2387 ( 0 21 28) 0 0.6153 0.7996 13 10 ( 3124 1k12_A) ( 765 1d7p_M) 0.6917 0.6917 2.9682 ( 1 29 36) 0 0.6917 0.6917 13 13 ( 3124 1k12_A) ( 1271 1eut ) 0.6835 0.9499 3.4949 ( 2 29 36) 0 0.6835 0.9499 13 9 ( 3124 1k12_A) ( 1884 1gny_A) 0.6915 0.6915 4.8176 ( 1 30 36) 0 0.6915 0.6915 13 13 ( 3124 1k12_A) ( 1918 1gqp_A) 0.8398 0.7302 3.8818 ( 2 41 55) 0 0.8398 0.7302 13 15 ( 3124 1k12_A) ( 1954 1gu3_A) 0.6153 0.8883 4.0826 ( 0 16 28) 0 0.6153 0.8883 13 9 ( 3124 1k12_A) ( 1959 1gui_A) 0.6151 0.7266 5.3766 ( 0 14 28) 0 0.7658 0.9012 13 11 ( 3124 1k12_A) ( 1989 1gwm_A) 0.6921 0.8177 4.2070 ( 0 23 36) 0 0.7552 0.8284 13 11 ( 3124 1k12_A) ( 2116 1h6y_A) 0.6918 0.7493 5.2664 ( 0 23 36) 0 0.6918 0.7493 13 12 ( 3124 1k12_A) ( 2241 1hn0_A) 0.5384 0.5832 4.3689 ( 0 15 21) 0 0.6149 0.6660 13 12 ( 3124 1k12_A) ( 2408 1i5p_A) 0.4615 0.4999 5.3736 ( 0 8 15) 0 0.6762 0.7265 13 12 ( 3124 1k12_A) ( 2762 1j83_A) 0.6151 0.7989 5.3952 ( 0 21 28) 0 0.6151 0.7989 13 10 ( 3124 1k12_A) ( 2872 1jhj_A) 0.9224 0.8567 3.4940 ( 1 51 66) 0 0.9224 0.8567 13 14 ( 3124 1k12_A) ( 2886 1ji6_A) 0.6152 0.7993 4.8783 ( 0 22 28) 0 0.6152 0.7993 13 10 ( 3124 1k12_A) ( 3063 1ju3_A) 0.7630 0.7630 5.7826 ( 2 38 45) 0 0.7630 0.7630 13 13 ( 3124 1k12_A) ( 3098 1jz7_A) 0.6917 0.5293 5.5684 ( 0 27 36) 0 0.8164 0.6388 13 17 ( 3124 1k12_A) ( 3124 1k12_A) 1.0000 1.0000 0.0000 ( 0 67 78) 0 1.0000 1.0000 13 13 ( 3124 1k12_A) ( 3157 1k3i_A) 0.6790 0.9273 3.4652 ( 2 26 36) 0 0.6790 0.9273 13 9 ( 3124 1k12_A) ( 3170 1k45_A) 0.6147 0.7258 6.6531 ( 0 14 28) 0 0.7667 0.9033 13 11 ( 3124 1k12_A) ( 3280 1kex_A) 0.6915 0.8969 4.2861 ( 1 28 36) 0 0.6915 0.8969 13 10 ( 3124 1k12_A) ( 3297 1kgy_A) 0.6912 0.8960 4.8296 ( 1 27 36) 0 0.6912 0.8960 13 10 ( 3124 1k12_A) ( 3562 1l7l_A) 0.5383 0.9957 5.8138 ( 0 8 21) 0 0.5383 0.9957 13 7 ( 3124 1k12_A) ( 3680 1lns_A) 0.7961 0.5705 5.4688 ( 4 47 55) 0 0.7961 0.5705 13 19 ( 3124 1k12_A) ( 4423 1nx9_A) 0.3845 0.3125 7.3732 ( 0 5 10) 0 0.7926 0.6668 13 16 ( 3124 1k12_A) ( 4496 1o59_A) 0.6922 0.8180 3.5036 ( 0 26 36) 0 0.6922 0.8180 13 11 ( 3124 1k12_A) ( 4497 1o59_A) 0.6922 0.9990 3.9954 ( 0 30 36) 0 0.6922 0.9990 13 9 ( 3124 1k12_A) ( 4599 1od3_A) 0.6152 0.7994 4.7449 ( 0 20 28) 0 0.6152 0.7994 13 10 ( 3124 1k12_A) ( 4654 1oh4_A) 0.6918 0.5998 5.2615 ( 0 30 36) 0 0.6918 0.5998 13 15 ( 3124 1k12_A) ( 4929 1p8j_A) 0.6152 0.9983 4.6255 ( 0 21 28) 0 0.6152 0.9983 13 8 ( 3124 1k12_A) ( 5569 1r64_A) 0.6573 0.7455 4.2815 ( 3 30 36) 0 0.6573 0.7455 13 11 ( 3124 1k12_A) ( 6050 1umh_A) 0.6151 0.6663 5.3192 ( 0 6 28) 0 0.6410 0.6780 13 12 ( 3124 1k12_A) ( 6140 1uxz_A) 0.6921 0.6921 4.4548 ( 0 26 36) 0 0.7584 0.7584 13 13 ( 3124 1k12_A) ( 6347 1xna_A) 0.6922 0.8178 3.9666 ( 0 24 36) 0 0.6922 0.8178 13 11 -------------------------------------------------------------------------------------------------------------------------