------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3170 1k45_A) ( 387 1bhg_A) 0.7259 0.8853 6.4340 ( 0 14 28) 0 0.7259 0.8853 11 9 ( 3170 1k45_A) ( 607 1ciy ) 0.8173 0.8986 5.0241 ( 0 22 36) 0 0.8173 0.8986 11 10 ( 3170 1k45_A) ( 700 1cx1_A) 0.6363 0.6999 3.5738 ( 0 10 21) 0 0.7257 0.7974 11 10 ( 3170 1k45_A) ( 765 1d7p_M) 0.5452 0.4614 6.3078 ( 0 9 15) 0 0.6361 0.5383 11 13 ( 3170 1k45_A) ( 1271 1eut ) 0.7265 0.8868 5.6233 ( 0 15 28) 0 0.7453 0.8868 11 9 ( 3170 1k45_A) ( 1884 1gny_A) 0.7269 0.6152 4.6719 ( 0 16 28) 0 0.9030 0.7665 11 13 ( 3170 1k45_A) ( 1918 1gqp_A) 0.5453 0.4000 5.7422 ( 0 5 15) 0 0.7170 0.5731 11 15 ( 3170 1k45_A) ( 1954 1gu3_A) 0.8176 0.9984 4.4973 ( 0 18 36) 0 0.8176 0.9984 11 9 ( 3170 1k45_A) ( 1959 1gui_A) 0.9089 0.9089 2.9874 ( 0 25 45) 0 0.9089 0.9089 11 11 ( 3170 1k45_A) ( 1989 1gwm_A) 0.9065 0.9065 5.7749 ( 0 26 45) 0 0.9065 0.9065 11 11 ( 3170 1k45_A) ( 2116 1h6y_A) 0.9085 0.8329 4.0273 ( 0 24 45) 0 0.9085 0.8329 11 12 ( 3170 1k45_A) ( 2241 1hn0_A) 0.8176 0.7496 4.4656 ( 0 20 36) 0 0.8176 0.7496 11 12 ( 3170 1k45_A) ( 2408 1i5p_A) 0.8181 0.7499 3.0874 ( 0 22 36) 0 0.8181 0.7499 11 12 ( 3170 1k45_A) ( 2762 1j83_A) 0.5452 0.5997 5.8368 ( 0 11 15) 0 0.5452 0.5997 11 10 ( 3170 1k45_A) ( 2872 1jhj_A) 0.6353 0.4997 7.2276 ( 0 7 21) 0 0.8092 0.6401 11 14 ( 3170 1k45_A) ( 2886 1ji6_A) 0.8173 0.8986 4.9872 ( 0 22 36) 0 0.8173 0.8986 11 10 ( 3170 1k45_A) ( 3063 1ju3_A) 0.5453 0.4615 5.2633 ( 0 5 15) 0 0.8976 0.7641 11 13 ( 3170 1k45_A) ( 3098 1jz7_A) 0.8165 0.5292 5.9273 ( 0 22 36) 0 0.8165 0.5292 11 17 ( 3170 1k45_A) ( 3124 1k12_A) 0.7258 0.6147 6.6531 ( 0 14 28) 0 0.9033 0.7667 11 13 ( 3170 1k45_A) ( 3157 1k3i_A) 0.6362 0.7772 4.7938 ( 0 8 21) 0 0.8086 0.9748 11 9 ( 3170 1k45_A) ( 3170 1k45_A) 1.0000 1.0000 0.0000 ( 0 39 55) 0 1.0000 1.0000 11 11 ( 3170 1k45_A) ( 3280 1kex_A) 0.6359 0.6992 5.9423 ( 0 11 21) 0 0.9001 0.9857 11 10 ( 3170 1k45_A) ( 3297 1kgy_A) 0.5450 0.5993 6.8685 ( 0 8 15) 0 0.7261 0.7981 11 10 ( 3170 1k45_A) ( 3562 1l7l_A) 0.6361 0.9979 4.8711 ( 0 5 21) 0 0.6361 0.9979 11 7 ( 3170 1k45_A) ( 3680 1lns_A) 0.3636 0.2105 4.6750 ( 0 4 6) 0 0.7707 0.5133 11 19 ( 3170 1k45_A) ( 4423 1nx9_A) 0.4544 0.3125 6.0506 ( 0 7 10) 0 0.8166 0.5623 11 16 ( 3170 1k45_A) ( 4496 1o59_A) 0.7261 0.7261 6.1783 ( 0 13 28) 0 0.8147 0.8147 11 11 ( 3170 1k45_A) ( 4497 1o59_A) 0.7268 0.8875 5.0274 ( 0 15 28) 0 0.7268 0.8875 11 9 ( 3170 1k45_A) ( 4599 1od3_A) 0.9087 0.9994 3.5770 ( 0 27 45) 0 0.9087 0.9994 11 10 ( 3170 1k45_A) ( 4654 1oh4_A) 0.9021 0.6652 7.4022 ( 0 28 45) 0 0.9021 0.6652 11 15 ( 3170 1k45_A) ( 4929 1p8j_A) 0.7248 0.9882 7.5187 ( 0 13 28) 0 0.7262 0.9949 11 8 ( 3170 1k45_A) ( 5569 1r64_A) 0.7266 0.7266 5.5008 ( 0 13 28) 0 0.7266 0.7266 11 11 ( 3170 1k45_A) ( 6050 1umh_A) 0.9068 0.8318 5.6005 ( 0 19 45) 0 0.9068 0.8318 11 12 ( 3170 1k45_A) ( 6140 1uxz_A) 0.9074 0.7685 5.1797 ( 0 27 45) 0 0.9074 0.7685 11 13 ( 3170 1k45_A) ( 6347 1xna_A) 0.7266 0.7266 5.3488 ( 0 10 28) 0 0.7266 0.7266 11 11 -------------------------------------------------------------------------------------------------------------------------