------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3280 1kex_A) ( 387 1bhg_A) 0.3999 0.4442 7.7915 ( 0 5 6) 0 0.4991 0.5541 10 9 ( 3280 1kex_A) ( 607 1ciy ) 0.5997 0.5997 5.8440 ( 0 10 15) 0 0.5997 0.5997 10 10 ( 3280 1kex_A) ( 700 1cx1_A) 0.6997 0.6997 4.6290 ( 0 13 21) 0 0.6997 0.6997 10 10 ( 3280 1kex_A) ( 765 1d7p_M) 0.8999 0.6923 2.6510 ( 0 28 36) 0 0.8999 0.6923 10 13 ( 3280 1kex_A) ( 1271 1eut ) 0.8952 0.9920 5.4946 ( 1 27 36) 0 0.8952 0.9920 10 9 ( 3280 1kex_A) ( 1884 1gny_A) 0.7994 0.6152 4.6981 ( 0 22 28) 0 0.7994 0.6152 10 13 ( 3280 1kex_A) ( 1918 1gqp_A) 0.9923 0.6656 5.9457 ( 1 30 45) 0 0.9923 0.6656 10 15 ( 3280 1kex_A) ( 1954 1gu3_A) 0.7978 0.8852 6.4917 ( 0 15 28) 0 0.7978 0.8852 10 9 ( 3280 1kex_A) ( 1959 1gui_A) 0.7966 0.7252 7.2262 ( 0 15 28) 0 0.7966 0.7252 10 11 ( 3280 1kex_A) ( 1989 1gwm_A) 0.4994 0.4542 8.3006 ( 0 6 10) 0 0.7028 0.6754 10 11 ( 3280 1kex_A) ( 2116 1h6y_A) 0.6998 0.5833 4.0555 ( 0 14 21) 0 0.6998 0.5833 10 12 ( 3280 1kex_A) ( 2241 1hn0_A) 0.5991 0.4996 7.5021 ( 0 8 15) 0 0.7631 0.7061 10 12 ( 3280 1kex_A) ( 2408 1i5p_A) 0.6889 0.5788 5.6837 ( 1 14 21) 0 0.7077 0.6237 10 12 ( 3280 1kex_A) ( 2762 1j83_A) 0.6965 0.6965 8.6205 ( 0 14 21) 0 0.6994 0.6994 10 10 ( 3280 1kex_A) ( 2872 1jhj_A) 0.8476 0.6320 3.8566 ( 2 25 36) 0 0.8476 0.6320 10 14 ( 3280 1kex_A) ( 2886 1ji6_A) 0.5998 0.5998 5.2224 ( 0 8 15) 0 0.5998 0.5998 10 10 ( 3280 1kex_A) ( 3063 1ju3_A) 0.5987 0.4612 8.1181 ( 0 11 15) 0 0.5987 0.4612 10 13 ( 3280 1kex_A) ( 3098 1jz7_A) 0.7970 0.4704 7.0316 ( 0 20 28) 0 0.7970 0.4704 10 17 ( 3280 1kex_A) ( 3124 1k12_A) 0.8969 0.6915 4.2861 ( 1 28 36) 0 0.8969 0.6915 10 13 ( 3280 1kex_A) ( 3157 1k3i_A) 0.7936 0.8782 3.6508 ( 1 19 28) 0 0.7936 0.8782 10 9 ( 3280 1kex_A) ( 3170 1k45_A) 0.6992 0.6359 5.9423 ( 0 11 21) 0 0.6992 0.6359 10 11 ( 3280 1kex_A) ( 3280 1kex_A) 1.0000 1.0000 0.0000 ( 0 37 45) 0 1.0000 1.0000 10 10 ( 3280 1kex_A) ( 3297 1kgy_A) 0.4994 0.4994 8.4449 ( 0 5 10) 0 0.6993 0.6993 10 10 ( 3280 1kex_A) ( 3562 1l7l_A) 0.4999 0.7137 5.3610 ( 0 1 10) 0 0.4999 0.7137 10 7 ( 3280 1kex_A) ( 3680 1lns_A) 0.8842 0.5201 6.6474 ( 3 34 45) 0 0.8842 0.5201 10 19 ( 3280 1kex_A) ( 4423 1nx9_A) 0.4999 0.3125 4.5450 ( 0 8 10) 0 0.9558 0.6204 10 16 ( 3280 1kex_A) ( 4496 1o59_A) 0.7983 0.7262 6.1104 ( 0 18 28) 0 0.7983 0.7262 10 11 ( 3280 1kex_A) ( 4497 1o59_A) 0.7983 0.8861 6.0530 ( 0 21 28) 0 0.7983 0.8861 10 9 ( 3280 1kex_A) ( 4599 1od3_A) 0.7974 0.7974 6.7796 ( 0 18 28) 0 0.8397 0.8397 10 10 ( 3280 1kex_A) ( 4654 1oh4_A) 0.7978 0.5330 6.4512 ( 0 21 28) 0 0.8445 0.5917 10 15 ( 3280 1kex_A) ( 4929 1p8j_A) 0.5998 0.7492 5.3702 ( 0 8 15) 0 0.5998 0.7492 10 8 ( 3280 1kex_A) ( 5569 1r64_A) 0.5996 0.5452 5.8667 ( 0 10 15) 0 0.5996 0.5452 10 11 ( 3280 1kex_A) ( 6050 1umh_A) 0.7995 0.6664 4.5645 ( 0 6 28) 0 0.7995 0.6664 10 12 ( 3280 1kex_A) ( 6140 1uxz_A) 0.6040 0.5368 4.9271 ( 3 20 28) 0 0.7957 0.6142 10 13 ( 3280 1kex_A) ( 6347 1xna_A) 0.7986 0.7264 5.8264 ( 0 14 28) 0 0.7986 0.7264 10 11 -------------------------------------------------------------------------------------------------------------------------