------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3297 1kgy_A) ( 387 1bhg_A) 0.6993 0.7766 5.7875 ( 0 12 21) 0 0.6993 0.7766 10 9 ( 3297 1kgy_A) ( 607 1ciy ) 0.9984 0.9984 4.4989 ( 0 35 45) 0 0.9984 0.9984 10 10 ( 3297 1kgy_A) ( 700 1cx1_A) 0.7995 0.7995 4.5045 ( 0 18 28) 0 0.7995 0.7995 10 10 ( 3297 1kgy_A) ( 765 1d7p_M) 0.4993 0.3844 8.8923 ( 0 9 10) 0 0.7073 0.5852 10 13 ( 3297 1kgy_A) ( 1271 1eut ) 0.4999 0.5553 5.6973 ( 0 8 10) 0 0.7981 0.8857 10 9 ( 3297 1kgy_A) ( 1884 1gny_A) 0.5000 0.3846 2.9754 ( 0 9 10) 0 0.5994 0.4945 10 13 ( 3297 1kgy_A) ( 1918 1gqp_A) 0.4000 0.2667 4.4846 ( 0 3 6) 0 0.7979 0.5331 10 15 ( 3297 1kgy_A) ( 1954 1gu3_A) 0.7997 0.8884 3.8556 ( 0 15 28) 0 0.7997 0.8884 10 9 ( 3297 1kgy_A) ( 1959 1gui_A) 0.5000 0.4545 4.4924 ( 0 7 10) 0 0.8952 0.8152 10 11 ( 3297 1kgy_A) ( 1989 1gwm_A) 0.9990 0.9085 4.0025 ( 0 30 45) 0 0.9990 0.9085 10 11 ( 3297 1kgy_A) ( 2116 1h6y_A) 0.8995 0.7498 3.9032 ( 0 20 36) 0 0.8995 0.7498 10 12 ( 3297 1kgy_A) ( 2241 1hn0_A) 0.4999 0.4166 5.0729 ( 0 6 10) 0 0.7990 0.6663 10 12 ( 3297 1kgy_A) ( 2408 1i5p_A) 0.9986 0.8328 4.3662 ( 0 32 45) 0 0.9986 0.8328 10 12 ( 3297 1kgy_A) ( 2762 1j83_A) 0.8999 0.8999 2.7763 ( 0 27 36) 0 0.8999 0.8999 10 10 ( 3297 1kgy_A) ( 2872 1jhj_A) 0.8923 0.6414 5.8136 ( 1 23 36) 0 0.8923 0.6414 10 14 ( 3297 1kgy_A) ( 2886 1ji6_A) 0.9981 0.9981 4.7200 ( 0 34 45) 0 0.9981 0.9981 10 10 ( 3297 1kgy_A) ( 3063 1ju3_A) 0.8939 0.6907 5.2557 ( 1 24 36) 0 0.8939 0.6907 10 13 ( 3297 1kgy_A) ( 3098 1jz7_A) 0.4997 0.2941 6.8588 ( 0 7 10) 0 0.9934 0.5878 10 17 ( 3297 1kgy_A) ( 3124 1k12_A) 0.8960 0.6912 4.8296 ( 1 27 36) 0 0.8960 0.6912 10 13 ( 3297 1kgy_A) ( 3157 1k3i_A) 0.7988 0.8869 5.5497 ( 0 15 28) 0 0.7988 0.8869 10 9 ( 3297 1kgy_A) ( 3170 1k45_A) 0.5993 0.5450 6.8685 ( 0 8 15) 0 0.7981 0.7261 10 11 ( 3297 1kgy_A) ( 3280 1kex_A) 0.4994 0.4994 8.4449 ( 0 5 10) 0 0.6993 0.6993 10 10 ( 3297 1kgy_A) ( 3297 1kgy_A) 1.0000 1.0000 0.0000 ( 0 36 45) 0 1.0000 1.0000 10 10 ( 3297 1kgy_A) ( 3562 1l7l_A) 0.5045 0.5684 5.0894 ( 1 6 15) 0 0.5045 0.7126 10 7 ( 3297 1kgy_A) ( 3680 1lns_A) 0.4990 0.2631 9.6868 ( 0 6 10) 0 0.5597 0.3987 10 19 ( 3297 1kgy_A) ( 4423 1nx9_A) 0.8948 0.5620 4.4063 ( 1 24 36) 0 0.8979 0.5623 10 16 ( 3297 1kgy_A) ( 4496 1o59_A) 0.5989 0.5448 7.8566 ( 0 9 15) 0 0.7994 0.7269 10 11 ( 3297 1kgy_A) ( 4497 1o59_A) 0.6999 0.7775 3.8930 ( 0 13 21) 0 0.7994 0.8879 10 9 ( 3297 1kgy_A) ( 4599 1od3_A) 0.4999 0.4999 5.6341 ( 0 6 10) 0 0.7988 0.7988 10 10 ( 3297 1kgy_A) ( 4654 1oh4_A) 0.9973 0.6663 5.1469 ( 0 36 45) 0 0.9973 0.6663 10 15 ( 3297 1kgy_A) ( 4929 1p8j_A) 0.7995 0.9984 4.5283 ( 0 18 28) 0 0.7995 0.9984 10 8 ( 3297 1kgy_A) ( 5569 1r64_A) 0.8984 0.8172 5.1437 ( 0 26 36) 0 0.8984 0.8172 10 11 ( 3297 1kgy_A) ( 6050 1umh_A) 0.8985 0.7494 5.0451 ( 0 18 36) 0 0.8985 0.7494 10 12 ( 3297 1kgy_A) ( 6140 1uxz_A) 0.9990 0.7690 4.0115 ( 0 34 45) 0 0.9990 0.7690 10 13 ( 3297 1kgy_A) ( 6347 1xna_A) 0.5998 0.5453 4.9250 ( 0 7 15) 0 0.7987 0.7265 10 11 -------------------------------------------------------------------------------------------------------------------------