------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3680 1lns_A) ( 387 1bhg_A) 0.3803 0.4881 5.4834 ( 4 20 28) 0 0.3803 0.5550 19 9 ( 3680 1lns_A) ( 607 1ciy ) 0.4737 0.8993 4.2094 ( 0 30 36) 0 0.4737 0.8993 19 10 ( 3680 1lns_A) ( 700 1cx1_A) 0.2631 0.4998 6.6369 ( 0 6 10) 0 0.5012 0.7210 19 10 ( 3680 1lns_A) ( 765 1d7p_M) 0.2632 0.3846 5.0439 ( 0 7 10) 0 0.3938 0.4944 19 13 ( 3680 1lns_A) ( 1271 1eut ) 0.2631 0.5548 7.9550 ( 0 7 10) 0 0.4178 0.7861 19 9 ( 3680 1lns_A) ( 1884 1gny_A) 0.5262 0.7687 3.7189 ( 1 37 45) 0 0.5262 0.7687 19 13 ( 3680 1lns_A) ( 1918 1gqp_A) 0.5262 0.6662 4.0859 ( 1 31 45) 0 0.5262 0.6662 19 15 ( 3680 1lns_A) ( 1954 1gu3_A) 0.2631 0.5551 6.7058 ( 0 3 10) 0 0.4514 0.7501 19 9 ( 3680 1lns_A) ( 1959 1gui_A) 0.2105 0.3636 6.3163 ( 0 3 6) 0 0.4547 0.6455 19 11 ( 3680 1lns_A) ( 1989 1gwm_A) 0.2521 0.3556 6.2612 ( 2 8 10) 0 0.4516 0.7267 19 11 ( 3680 1lns_A) ( 2116 1h6y_A) 0.2632 0.4166 5.0407 ( 0 6 10) 0 0.4730 0.7433 19 12 ( 3680 1lns_A) ( 2241 1hn0_A) 0.5249 0.8198 4.2348 ( 2 33 45) 0 0.5249 0.8198 19 12 ( 3680 1lns_A) ( 2408 1i5p_A) 0.4736 0.7489 5.9664 ( 0 25 36) 0 0.4736 0.7489 19 12 ( 3680 1lns_A) ( 2762 1j83_A) 0.3158 0.5998 4.9596 ( 0 10 15) 0 0.4208 0.7930 19 10 ( 3680 1lns_A) ( 2872 1jhj_A) 0.5042 0.6315 3.9302 ( 4 32 45) 0 0.5042 0.6315 19 14 ( 3680 1lns_A) ( 2886 1ji6_A) 0.4208 0.7949 6.0246 ( 1 22 28) 0 0.5260 0.9935 19 10 ( 3680 1lns_A) ( 3063 1ju3_A) 0.5789 0.8457 3.4329 ( 1 45 55) 0 0.5789 0.8457 19 13 ( 3680 1lns_A) ( 3098 1jz7_A) 0.5202 0.5777 5.8559 ( 3 34 45) 0 0.5202 0.5777 19 17 ( 3680 1lns_A) ( 3124 1k12_A) 0.5705 0.7961 5.4688 ( 4 47 55) 0 0.5705 0.7961 19 13 ( 3680 1lns_A) ( 3157 1k3i_A) 0.4733 0.9858 6.8270 ( 1 25 36) 0 0.4733 0.9858 19 9 ( 3680 1lns_A) ( 3170 1k45_A) 0.2105 0.3636 4.6750 ( 0 4 6) 0 0.5133 0.7707 19 11 ( 3680 1lns_A) ( 3280 1kex_A) 0.5201 0.8842 6.6474 ( 3 34 45) 0 0.5201 0.8842 19 10 ( 3680 1lns_A) ( 3297 1kgy_A) 0.2631 0.4990 9.6868 ( 0 6 10) 0 0.3987 0.5597 19 10 ( 3680 1lns_A) ( 3562 1l7l_A) 0.2105 0.5712 5.5865 ( 0 3 6) 0 0.3616 0.8535 19 7 ( 3680 1lns_A) ( 3680 1lns_A) 1.0000 1.0000 0.0000 ( 0 144 171) 0 1.0000 1.0000 19 19 ( 3680 1lns_A) ( 4423 1nx9_A) 0.6825 0.8084 3.9461 ( 3 66 78) 0 0.6825 0.8084 19 16 ( 3680 1lns_A) ( 4496 1o59_A) 0.2624 0.4433 6.8082 ( 1 8 10) 0 0.4210 0.7259 19 11 ( 3680 1lns_A) ( 4497 1o59_A) 0.3684 0.7765 5.8551 ( 0 15 21) 0 0.4210 0.8857 19 9 ( 3680 1lns_A) ( 4599 1od3_A) 0.2105 0.4000 5.0777 ( 0 5 6) 0 0.4209 0.7974 19 10 ( 3680 1lns_A) ( 4654 1oh4_A) 0.2632 0.3333 4.5257 ( 0 7 10) 0 0.4307 0.4958 19 15 ( 3680 1lns_A) ( 4929 1p8j_A) 0.4210 0.9970 5.2836 ( 0 20 28) 0 0.4210 0.9975 19 8 ( 3680 1lns_A) ( 5569 1r64_A) 0.5253 0.8936 4.9002 ( 2 36 45) 0 0.5253 0.8936 19 11 ( 3680 1lns_A) ( 6050 1umh_A) 0.2632 0.4166 5.1940 ( 0 2 10) 0 0.4209 0.6651 19 12 ( 3680 1lns_A) ( 6140 1uxz_A) 0.5209 0.7359 5.5605 ( 3 35 45) 0 0.5209 0.7359 19 13 ( 3680 1lns_A) ( 6347 1xna_A) 0.4210 0.7266 5.3734 ( 0 16 28) 0 0.4210 0.7266 19 11 -------------------------------------------------------------------------------------------------------------------------