------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4497 1o59_A) ( 387 1bhg_A) 0.8872 0.8872 5.3440 ( 0 20 28) 0 0.8872 0.8872 9 9 ( 4497 1o59_A) ( 607 1ciy ) 0.8861 0.7984 6.0328 ( 0 22 28) 0 0.8875 0.7992 9 10 ( 4497 1o59_A) ( 700 1cx1_A) 0.8886 0.7999 3.2945 ( 0 20 28) 0 0.8886 0.7999 9 10 ( 4497 1o59_A) ( 765 1d7p_M) 0.7774 0.5384 4.2343 ( 0 17 21) 0 0.7774 0.5384 9 13 ( 4497 1o59_A) ( 1271 1eut ) 0.8887 0.8887 3.1105 ( 0 21 28) 0 0.8887 0.8887 9 9 ( 4497 1o59_A) ( 1884 1gny_A) 0.8866 0.6150 5.7233 ( 0 22 28) 0 0.8866 0.6150 9 13 ( 4497 1o59_A) ( 1918 1gqp_A) 0.8884 0.5333 3.9808 ( 0 16 28) 0 0.8884 0.5333 9 15 ( 4497 1o59_A) ( 1954 1gu3_A) 0.8881 0.8881 4.3837 ( 0 17 28) 0 0.8881 0.8881 9 9 ( 4497 1o59_A) ( 1959 1gui_A) 0.8881 0.7270 4.4176 ( 0 15 28) 0 0.8881 0.7270 9 11 ( 4497 1o59_A) ( 1989 1gwm_A) 0.8887 0.7272 3.2468 ( 0 18 28) 0 0.8887 0.7272 9 11 ( 4497 1o59_A) ( 2116 1h6y_A) 0.8883 0.6665 4.1645 ( 0 15 28) 0 0.8883 0.6665 9 12 ( 4497 1o59_A) ( 2241 1hn0_A) 0.7770 0.5831 5.2082 ( 0 14 21) 0 0.8871 0.6662 9 12 ( 4497 1o59_A) ( 2408 1i5p_A) 0.6660 0.4998 6.0878 ( 0 10 15) 0 0.7774 0.5832 9 12 ( 4497 1o59_A) ( 2762 1j83_A) 0.5547 0.4995 8.1649 ( 0 8 10) 0 0.7767 0.6994 9 10 ( 4497 1o59_A) ( 2872 1jhj_A) 0.9993 0.6428 3.6289 ( 0 25 36) 0 0.9993 0.6428 9 14 ( 4497 1o59_A) ( 2886 1ji6_A) 0.8862 0.7984 5.9641 ( 0 21 28) 0 0.8879 0.7994 9 10 ( 4497 1o59_A) ( 3063 1ju3_A) 0.8787 0.6137 6.3121 ( 1 21 28) 0 0.8787 0.6137 9 13 ( 4497 1o59_A) ( 3098 1jz7_A) 0.8883 0.4706 4.1314 ( 0 21 28) 0 0.8883 0.4706 9 17 ( 4497 1o59_A) ( 3124 1k12_A) 0.9990 0.6922 3.9954 ( 0 30 36) 0 0.9990 0.6922 9 13 ( 4497 1o59_A) ( 3157 1k3i_A) 0.8885 0.8885 3.6448 ( 0 17 28) 0 0.8885 0.8885 9 9 ( 4497 1o59_A) ( 3170 1k45_A) 0.8875 0.7268 5.0274 ( 0 15 28) 0 0.8875 0.7268 9 11 ( 4497 1o59_A) ( 3280 1kex_A) 0.8861 0.7983 6.0530 ( 0 21 28) 0 0.8861 0.7983 9 10 ( 4497 1o59_A) ( 3297 1kgy_A) 0.7775 0.6999 3.8930 ( 0 13 21) 0 0.8879 0.7994 9 10 ( 4497 1o59_A) ( 3562 1l7l_A) 0.4444 0.5711 5.9871 ( 0 0 6) 0 0.4444 0.5711 9 7 ( 4497 1o59_A) ( 3680 1lns_A) 0.7765 0.3684 5.8551 ( 0 15 21) 0 0.8857 0.4210 9 19 ( 4497 1o59_A) ( 4423 1nx9_A) 0.8861 0.4998 6.0530 ( 0 22 28) 0 0.8882 0.5000 9 16 ( 4497 1o59_A) ( 4496 1o59_A) 0.9998 0.8181 2.5524 ( 0 27 36) 0 0.9998 0.8181 9 11 ( 4497 1o59_A) ( 4497 1o59_A) 1.0000 1.0000 0.0000 ( 0 31 36) 0 1.0000 1.0000 9 9 ( 4497 1o59_A) ( 4599 1od3_A) 0.8881 0.7996 4.3360 ( 0 20 28) 0 0.8881 0.7996 9 10 ( 4497 1o59_A) ( 4654 1oh4_A) 0.8861 0.5331 6.0103 ( 0 22 28) 0 0.9924 0.5994 9 15 ( 4497 1o59_A) ( 4929 1p8j_A) 0.8858 0.9945 6.1808 ( 0 21 28) 0 0.8858 0.9945 9 8 ( 4497 1o59_A) ( 5569 1r64_A) 0.7775 0.6363 4.0906 ( 0 15 21) 0 0.8862 0.7263 9 11 ( 4497 1o59_A) ( 6050 1umh_A) 0.8879 0.6664 4.6286 ( 0 6 28) 0 0.8879 0.6664 9 12 ( 4497 1o59_A) ( 6140 1uxz_A) 0.8887 0.6154 3.0180 ( 0 20 28) 0 0.8887 0.6154 9 13 ( 4497 1o59_A) ( 6347 1xna_A) 0.9991 0.8178 3.9661 ( 0 24 36) 0 0.9991 0.8178 9 11 -------------------------------------------------------------------------------------------------------------------------