------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4929 1p8j_A) ( 387 1bhg_A) 0.7498 0.6665 4.0093 ( 0 8 15) 0 0.7498 0.6665 8 9 ( 4929 1p8j_A) ( 607 1ciy ) 0.9997 0.7999 3.0154 ( 0 21 28) 0 0.9997 0.7999 8 10 ( 4929 1p8j_A) ( 700 1cx1_A) 0.9888 0.7963 7.4214 ( 0 20 28) 0 0.9917 0.7972 8 10 ( 4929 1p8j_A) ( 765 1d7p_M) 0.8690 0.5379 7.4647 ( 0 15 21) 0 0.8690 0.5379 8 13 ( 4929 1p8j_A) ( 1271 1eut ) 0.8736 0.7770 5.1444 ( 0 13 21) 0 0.9959 0.8866 8 9 ( 4929 1p8j_A) ( 1884 1gny_A) 0.9972 0.6151 5.2067 ( 0 22 28) 0 0.9972 0.6151 8 13 ( 4929 1p8j_A) ( 1918 1gqp_A) 0.9971 0.5332 5.2491 ( 0 16 28) 0 0.9971 0.5332 8 15 ( 4929 1p8j_A) ( 1954 1gu3_A) 0.9901 0.8833 7.1812 ( 0 15 28) 0 0.9949 0.8860 8 9 ( 4929 1p8j_A) ( 1959 1gui_A) 0.8746 0.6363 3.8164 ( 0 8 21) 0 0.8746 0.6363 8 11 ( 4929 1p8j_A) ( 1989 1gwm_A) 0.9991 0.7271 3.9427 ( 0 15 28) 0 0.9991 0.7271 8 11 ( 4929 1p8j_A) ( 2116 1h6y_A) 0.9987 0.6665 4.2852 ( 0 16 28) 0 0.9993 0.6666 8 12 ( 4929 1p8j_A) ( 2241 1hn0_A) 0.9978 0.6664 4.9310 ( 0 18 28) 0 0.9978 0.6664 8 12 ( 4929 1p8j_A) ( 2408 1i5p_A) 0.9995 0.6666 3.3141 ( 0 17 28) 0 0.9995 0.6666 8 12 ( 4929 1p8j_A) ( 2762 1j83_A) 0.9932 0.7978 6.5234 ( 0 20 28) 0 0.9970 0.7990 8 10 ( 4929 1p8j_A) ( 2872 1jhj_A) 0.9983 0.5713 4.5747 ( 0 18 28) 0 0.9983 0.5713 8 14 ( 4929 1p8j_A) ( 2886 1ji6_A) 0.9996 0.7999 3.2453 ( 0 20 28) 0 0.9996 0.7999 8 10 ( 4929 1p8j_A) ( 3063 1ju3_A) 0.6235 0.3845 7.9903 ( 0 5 10) 0 0.9729 0.6129 8 13 ( 4929 1p8j_A) ( 3098 1jz7_A) 0.9986 0.4706 4.3422 ( 0 19 28) 0 0.9986 0.4706 8 17 ( 4929 1p8j_A) ( 3124 1k12_A) 0.9983 0.6152 4.6255 ( 0 21 28) 0 0.9983 0.6152 8 13 ( 4929 1p8j_A) ( 3157 1k3i_A) 0.8733 0.7768 5.4630 ( 0 12 21) 0 0.8733 0.7768 8 9 ( 4929 1p8j_A) ( 3170 1k45_A) 0.9882 0.7248 7.5187 ( 0 13 28) 0 0.9949 0.7262 8 11 ( 4929 1p8j_A) ( 3280 1kex_A) 0.7492 0.5998 5.3702 ( 0 8 15) 0 0.7492 0.5998 8 10 ( 4929 1p8j_A) ( 3297 1kgy_A) 0.9984 0.7995 4.5283 ( 0 18 28) 0 0.9984 0.7995 8 10 ( 4929 1p8j_A) ( 3562 1l7l_A) 0.7491 0.8554 5.6442 ( 0 7 15) 0 0.7491 0.8554 8 7 ( 4929 1p8j_A) ( 3680 1lns_A) 0.9970 0.4210 5.2836 ( 0 20 28) 0 0.9975 0.4210 8 19 ( 4929 1p8j_A) ( 4423 1nx9_A) 0.9973 0.4999 5.1734 ( 0 20 28) 0 0.9979 0.4999 8 16 ( 4929 1p8j_A) ( 4496 1o59_A) 0.8747 0.6363 3.4660 ( 0 11 21) 0 0.8747 0.6363 8 11 ( 4929 1p8j_A) ( 4497 1o59_A) 0.9945 0.8858 6.1808 ( 0 21 28) 0 0.9945 0.8858 8 9 ( 4929 1p8j_A) ( 4599 1od3_A) 0.8746 0.6999 3.8491 ( 0 14 21) 0 0.8746 0.6999 8 10 ( 4929 1p8j_A) ( 4654 1oh4_A) 0.9911 0.5329 6.9795 ( 0 20 28) 0 0.9947 0.5331 8 15 ( 4929 1p8j_A) ( 4929 1p8j_A) 1.0000 1.0000 0.0000 ( 0 22 28) 0 1.0000 1.0000 8 8 ( 4929 1p8j_A) ( 5569 1r64_A) 0.9996 0.7272 3.1111 ( 0 21 28) 0 0.9996 0.7272 8 11 ( 4929 1p8j_A) ( 6050 1umh_A) 0.8746 0.5833 3.7946 ( 0 4 21) 0 0.8746 0.5833 8 12 ( 4929 1p8j_A) ( 6140 1uxz_A) 0.9995 0.6153 3.3710 ( 0 19 28) 0 0.9995 0.6153 8 13 ( 4929 1p8j_A) ( 6347 1xna_A) 0.8746 0.6363 3.6740 ( 0 12 21) 0 0.8746 0.6363 8 11 -------------------------------------------------------------------------------------------------------------------------