------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6140 1uxz_A) ( 387 1bhg_A) 0.6151 0.8869 5.5143 ( 0 19 28) 0 0.6151 0.8869 13 9 ( 6140 1uxz_A) ( 607 1ciy ) 0.7686 0.9978 3.9413 ( 1 37 45) 0 0.7686 0.9978 13 10 ( 6140 1uxz_A) ( 700 1cx1_A) 0.4612 0.5988 7.9934 ( 0 9 15) 0 0.6888 0.8873 13 10 ( 6140 1uxz_A) ( 765 1d7p_M) 0.4615 0.4615 5.1961 ( 0 11 15) 0 0.4706 0.4706 13 13 ( 6140 1uxz_A) ( 1271 1eut ) 0.4615 0.6664 4.8273 ( 0 9 15) 0 0.5501 0.6664 13 9 ( 6140 1uxz_A) ( 1884 1gny_A) 0.4613 0.4613 7.0782 ( 0 9 15) 0 0.8207 0.8207 13 13 ( 6140 1uxz_A) ( 1918 1gqp_A) 0.7133 0.6371 4.6356 ( 3 30 45) 0 0.7133 0.6371 13 15 ( 6140 1uxz_A) ( 1954 1gu3_A) 0.6922 0.9991 3.9433 ( 0 21 36) 0 0.6922 0.9991 13 9 ( 6140 1uxz_A) ( 1959 1gui_A) 0.7687 0.9079 4.7036 ( 0 27 45) 0 0.7687 0.9079 13 11 ( 6140 1uxz_A) ( 1989 1gwm_A) 0.8453 0.9980 3.8596 ( 1 38 55) 0 0.8453 0.9980 13 11 ( 6140 1uxz_A) ( 2116 1h6y_A) 0.5384 0.5833 3.5148 ( 0 13 21) 0 0.6869 0.7409 13 12 ( 6140 1uxz_A) ( 2241 1hn0_A) 0.3845 0.4165 7.1239 ( 0 7 10) 0 0.8444 0.9141 13 12 ( 6140 1uxz_A) ( 2408 1i5p_A) 0.7686 0.8324 3.5020 ( 1 34 45) 0 0.8406 0.9085 13 12 ( 6140 1uxz_A) ( 2762 1j83_A) 0.6921 0.8992 4.3180 ( 0 29 36) 0 0.6921 0.8992 13 10 ( 6140 1uxz_A) ( 2872 1jhj_A) 0.7678 0.7133 4.3999 ( 1 28 45) 0 0.7678 0.7133 13 14 ( 6140 1uxz_A) ( 2886 1ji6_A) 0.7686 0.9978 3.6637 ( 1 36 45) 0 0.7686 0.9978 13 10 ( 6140 1uxz_A) ( 3063 1ju3_A) 0.3845 0.3845 7.5581 ( 0 6 10) 0 0.7190 0.7190 13 13 ( 6140 1uxz_A) ( 3098 1jz7_A) 0.7685 0.5880 5.1816 ( 0 34 45) 0 0.7685 0.5880 13 17 ( 6140 1uxz_A) ( 3124 1k12_A) 0.6921 0.6921 4.4548 ( 0 26 36) 0 0.7584 0.7584 13 13 ( 6140 1uxz_A) ( 3157 1k3i_A) 0.6906 0.9897 5.7441 ( 1 25 36) 0 0.6906 0.9897 13 9 ( 6140 1uxz_A) ( 3170 1k45_A) 0.7685 0.9074 5.1797 ( 0 27 45) 0 0.7685 0.9074 13 11 ( 6140 1uxz_A) ( 3280 1kex_A) 0.5368 0.6040 4.9271 ( 3 20 28) 0 0.6142 0.7957 13 10 ( 6140 1uxz_A) ( 3297 1kgy_A) 0.7690 0.9990 4.0115 ( 0 34 45) 0 0.7690 0.9990 13 10 ( 6140 1uxz_A) ( 3562 1l7l_A) 0.5223 0.7917 6.0945 ( 1 9 21) 0 0.5382 0.9941 13 7 ( 6140 1uxz_A) ( 3680 1lns_A) 0.7359 0.5209 5.5605 ( 3 35 45) 0 0.7359 0.5209 13 19 ( 6140 1uxz_A) ( 4423 1nx9_A) 0.3845 0.3124 8.2327 ( 0 7 10) 0 0.8386 0.6848 13 16 ( 6140 1uxz_A) ( 4496 1o59_A) 0.6153 0.7272 3.3816 ( 0 16 28) 0 0.6153 0.7272 13 11 ( 6140 1uxz_A) ( 4497 1o59_A) 0.6154 0.8887 3.0180 ( 0 20 28) 0 0.6154 0.8887 13 9 ( 6140 1uxz_A) ( 4599 1od3_A) 0.7687 0.9981 3.4548 ( 1 37 45) 0 0.7687 0.9981 13 10 ( 6140 1uxz_A) ( 4654 1oh4_A) 0.8447 0.7326 5.4520 ( 0 43 55) 0 0.8447 0.7326 13 15 ( 6140 1uxz_A) ( 4929 1p8j_A) 0.6153 0.9995 3.3710 ( 0 19 28) 0 0.6153 0.9995 13 8 ( 6140 1uxz_A) ( 5569 1r64_A) 0.6788 0.7884 4.4950 ( 2 26 36) 0 0.6788 0.7884 13 11 ( 6140 1uxz_A) ( 6050 1umh_A) 0.7665 0.8293 4.1765 ( 1 23 45) 0 0.7665 0.8293 13 12 ( 6140 1uxz_A) ( 6140 1uxz_A) 1.0000 1.0000 0.0000 ( 0 64 78) 0 1.0000 1.0000 13 13 ( 6140 1uxz_A) ( 6347 1xna_A) 0.6153 0.7270 4.1378 ( 0 15 28) 0 0.6153 0.7270 13 11 -------------------------------------------------------------------------------------------------------------------------