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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  129 1ahs_A)  (  129 1ahs_A)     1.0000   1.0000   0.0000 (   0   25   36)   0     1.0000   1.0000    9   9
(  129 1ahs_A)  (  474 1bvp_1)     0.9999   0.7500   2.2939 (   0   25   36)   0     0.9999   0.7500    9  12
(  129 1ahs_A)  ( 1548 1flc_A)     0.6664   0.6664   4.7646 (   0    3   15)   0     0.7760   0.7760    9   9
(  129 1ahs_A)  ( 3047 1jsd_A)     0.8848   0.3333   6.6620 (   0    4   28)   0     0.8848   0.3333    9  24
(  129 1ahs_A)  ( 5333 1qhd_A)     0.8178   0.5463   4.6998 (   2   19   36)   0     0.8839   0.5463    9  16
(  129 1ahs_A)  ( 5997 1uf2_C)     0.9932   0.7484   3.4030 (   1   25   36)   0     0.9932   0.7484    9  12
(  129 1ahs_A)  ( 6555 2viu_A)     0.7513   0.2753   5.4408 (   1    9   28)   0     0.7513   0.2753    9  29

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