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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3047 1jsd_A)  (  129 1ahs_A)     0.3333   0.8848   6.6620 (   0    4   28)   0     0.3333   0.8848   24   9
( 3047 1jsd_A)  (  474 1bvp_1)     0.3333   0.6658   6.3879 (   0    4   28)   0     0.3333   0.6658   24  12
( 3047 1jsd_A)  ( 1548 1flc_A)     0.3333   0.8888   2.3421 (   0    7   28)   0     0.3333   0.8888   24   9
( 3047 1jsd_A)  ( 3047 1jsd_A)     1.0000   1.0000   0.0000 (   0  174  276)   0     1.0000   1.0000   24  24
( 3047 1jsd_A)  ( 5333 1qhd_A)     0.2083   0.3125   7.7671 (   0    1   10)   0     0.3749   0.5617   24  16
( 3047 1jsd_A)  ( 5997 1uf2_C)     0.1667   0.3333   5.3854 (   0    2    6)   0     0.2917   0.5830   24  12
( 3047 1jsd_A)  ( 6555 2viu_A)     0.8913   0.7484   2.4254 (   8  125  231)   0     0.8913   0.7484   24  29

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