------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 245 1ayo_A) ( 34 1a3q_A) 0.3857 0.3899 6.6059 ( 3 12 21) 0 0.7191 0.7869 11 10 ( 245 1ayo_A) ( 159 1amx ) 0.7111 0.6315 4.4853 ( 2 16 45) 0 0.8157 0.6421 11 14 ( 245 1ayo_A) ( 169 1aoh_A) 0.8176 0.8176 4.5009 ( 0 14 36) 0 0.8176 0.8176 11 11 ( 245 1ayo_A) ( 245 1ayo_A) 1.0000 1.0000 0.0000 ( 0 34 55) 0 1.0000 1.0000 11 11 ( 245 1ayo_A) ( 374 1bg1_A) 0.4545 0.2778 4.6499 ( 0 6 10) 0 0.8083 0.4991 11 18 ( 245 1ayo_A) ( 1008 1e2w_A) 0.7270 0.7995 4.4319 ( 0 8 28) 0 0.7270 0.7995 11 10 ( 245 1ayo_A) ( 1040 1e5c_A) 0.4545 0.6248 5.0205 ( 0 5 10) 0 0.4545 0.6248 11 8 ( 245 1ayo_A) ( 1087 1eaq_A) 0.4541 0.4541 8.9924 ( 0 5 10) 0 0.6361 0.6361 11 11 ( 245 1ayo_A) ( 1300 1exh ) 0.8177 0.8991 4.4104 ( 0 18 36) 0 0.8177 0.8991 11 10 ( 245 1ayo_A) ( 1351 1f0l_A) 0.8093 0.5611 4.1406 ( 1 18 36) 0 0.8093 0.5611 11 16 ( 245 1ayo_A) ( 1689 1g1k_A) 0.8176 0.6921 4.4429 ( 0 11 36) 0 0.8176 0.6921 11 13 ( 245 1ayo_A) ( 1760 1g87_A) 0.7262 0.7262 6.0517 ( 0 13 28) 0 0.7262 0.7262 11 11 ( 245 1ayo_A) ( 2097 1h6f_A) 0.4545 0.3571 5.2842 ( 0 2 10) 0 0.4545 0.3571 11 14 ( 245 1ayo_A) ( 2375 1i31_A) 0.8177 0.5294 4.2593 ( 0 14 36) 0 0.8177 0.5294 11 17 ( 245 1ayo_A) ( 2769 1j8r_A) 0.3633 0.2856 11.0873 ( 0 4 6) 0 0.5407 0.4271 11 14 ( 245 1ayo_A) ( 3343 1klf_B) 0.5452 0.4614 5.9685 ( 0 2 15) 0 0.5452 0.4614 11 13 ( 245 1ayo_A) ( 3344 1klf_B) 0.4545 0.6247 5.3225 ( 0 3 10) 0 0.4545 0.6247 11 8 ( 245 1ayo_A) ( 3803 1m2o_A) 0.7266 0.6662 5.3919 ( 0 12 28) 0 0.7266 0.6662 11 12 ( 245 1ayo_A) ( 3986 1mnn_A) 0.3635 0.1818 8.4278 ( 0 4 6) 0 0.4609 0.3063 11 22 ( 245 1ayo_A) ( 4098 1n12_A) 0.4540 0.6223 9.2811 ( 0 4 10) 0 0.5452 0.7486 11 8 ( 245 1ayo_A) ( 4141 1n67_A) 0.8163 0.8163 6.0451 ( 0 17 36) 0 0.8163 0.8163 11 11 ( 245 1ayo_A) ( 4142 1n67_A) 0.7271 0.6153 3.7472 ( 0 12 28) 0 0.8137 0.6903 11 13 ( 245 1ayo_A) ( 4187 1nbc_A) 0.4544 0.4544 6.4000 ( 0 8 10) 0 0.6361 0.6361 11 11 ( 245 1ayo_A) ( 4232 1nfi_A) 0.6357 0.8720 6.2751 ( 0 12 21) 0 0.6357 0.8720 11 8 ( 245 1ayo_A) ( 4570 1o9w_A) 0.3636 0.2667 5.0338 ( 0 3 6) 0 0.4602 0.4047 11 15 ( 245 1ayo_A) ( 4910 1p5v_B) 0.5449 0.8518 7.4575 ( 0 8 15) 0 0.6357 0.9936 11 7 ( 245 1ayo_A) ( 4922 1p7h_L) 0.5453 0.5453 5.2152 ( 0 9 15) 0 0.8102 0.8102 11 11 ( 245 1ayo_A) ( 4976 1pd1_A) 0.7265 0.6662 5.5583 ( 0 14 28) 0 0.7265 0.6662 11 12 ( 245 1ayo_A) ( 4985 1pdk_B) 0.5453 0.6664 4.8947 ( 0 6 15) 0 0.5581 0.6664 11 9 ( 245 1ayo_A) ( 5278 1qba ) 0.4543 0.4543 7.4460 ( 0 4 10) 0 0.6362 0.6362 11 11 ( 245 1ayo_A) ( 5520 1r17_A) 0.7252 0.6653 7.2076 ( 0 10 28) 0 0.7252 0.6653 11 12 ( 245 1ayo_A) ( 5521 1r17_A) 0.8028 0.8028 6.2955 ( 1 16 36) 0 0.8028 0.8028 11 11 ( 245 1ayo_A) ( 6068 1uol_A) 0.8173 0.6919 4.9538 ( 0 18 36) 0 0.8173 0.6919 11 13 ( 245 1ayo_A) ( 6119 1uur_A) 0.5452 0.4000 5.8368 ( 0 5 15) 0 0.5452 0.4000 11 15 -------------------------------------------------------------------------------------------------------------------------