------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3344 1klf_B) ( 34 1a3q_A) 0.4999 0.4000 5.7857 ( 0 2 6) 0 0.4999 0.4000 8 10 ( 3344 1klf_B) ( 159 1amx ) 0.8725 0.4998 6.0112 ( 0 8 21) 0 0.8725 0.4998 8 14 ( 3344 1klf_B) ( 169 1aoh_A) 0.6249 0.4545 4.3983 ( 0 4 10) 0 0.6249 0.4545 8 11 ( 3344 1klf_B) ( 245 1ayo_A) 0.6247 0.4545 5.3225 ( 0 3 10) 0 0.6247 0.4545 8 11 ( 3344 1klf_B) ( 374 1bg1_A) 0.6246 0.2778 5.7576 ( 0 5 10) 0 0.7491 0.4101 8 18 ( 3344 1klf_B) ( 1008 1e2w_A) 0.7478 0.5993 7.0619 ( 0 6 15) 0 0.7478 0.5993 8 10 ( 3344 1klf_B) ( 1040 1e5c_A) 0.6247 0.6247 5.5254 ( 0 2 10) 0 0.6247 0.6247 8 8 ( 3344 1klf_B) ( 1087 1eaq_A) 0.5138 0.4230 8.4738 ( 1 6 10) 0 0.6244 0.5042 8 11 ( 3344 1klf_B) ( 1300 1exh ) 0.5140 0.4529 7.8832 ( 1 6 10) 0 0.7475 0.5992 8 10 ( 3344 1klf_B) ( 1351 1f0l_A) 0.6245 0.3125 6.0258 ( 0 4 10) 0 0.9219 0.4970 8 16 ( 3344 1klf_B) ( 1689 1g1k_A) 0.6247 0.3846 5.2493 ( 0 4 10) 0 0.8666 0.5377 8 13 ( 3344 1klf_B) ( 1760 1g87_A) 0.8583 0.6329 9.7224 ( 0 9 21) 0 0.8583 0.6329 8 11 ( 3344 1klf_B) ( 2097 1h6f_A) 0.5000 0.2857 3.4862 ( 0 5 6) 0 0.6249 0.3571 8 14 ( 3344 1klf_B) ( 2375 1i31_A) 0.6235 0.2941 7.9890 ( 0 1 10) 0 0.8750 0.4666 8 17 ( 3344 1klf_B) ( 2769 1j8r_A) 0.7466 0.4284 7.8753 ( 0 9 15) 0 0.7466 0.4284 8 14 ( 3344 1klf_B) ( 3343 1klf_B) 0.9995 0.6153 3.3571 ( 0 11 28) 0 0.9995 0.6153 8 13 ( 3344 1klf_B) ( 3344 1klf_B) 1.0000 1.0000 0.0000 ( 0 17 28) 0 1.0000 1.0000 8 8 ( 3344 1klf_B) ( 3803 1m2o_A) 0.7495 0.4999 4.8155 ( 0 6 15) 0 0.8729 0.5831 8 12 ( 3344 1klf_B) ( 3986 1mnn_A) 0.4997 0.1818 7.2076 ( 0 5 6) 0 0.8726 0.3182 8 22 ( 3344 1klf_B) ( 4098 1n12_A) 0.7455 0.7455 8.4217 ( 0 8 15) 0 0.7455 0.7455 8 8 ( 3344 1klf_B) ( 4141 1n67_A) 0.6248 0.4545 4.5685 ( 0 4 10) 0 0.7443 0.5443 8 11 ( 3344 1klf_B) ( 4142 1n67_A) 0.5142 0.3698 6.8109 ( 1 6 10) 0 0.7752 0.5271 8 13 ( 3344 1klf_B) ( 4187 1nbc_A) 0.4996 0.3636 7.7209 ( 0 2 6) 0 0.6244 0.5040 8 11 ( 3344 1klf_B) ( 4232 1nfi_A) 0.8745 0.8745 3.9950 ( 0 12 21) 0 0.8745 0.8745 8 8 ( 3344 1klf_B) ( 4570 1o9w_A) 0.9967 0.5332 5.4308 ( 0 8 28) 0 0.9967 0.5332 8 15 ( 3344 1klf_B) ( 4910 1p5v_B) 0.7492 0.8555 5.5335 ( 0 8 15) 0 0.8700 0.9904 8 7 ( 3344 1klf_B) ( 4922 1p7h_L) 0.8746 0.6363 3.7049 ( 0 12 21) 0 0.8746 0.6363 8 11 ( 3344 1klf_B) ( 4976 1pd1_A) 0.4996 0.3333 7.6562 ( 0 4 6) 0 0.8731 0.5831 8 12 ( 3344 1klf_B) ( 4985 1pdk_B) 0.6248 0.5555 4.6931 ( 0 4 10) 0 0.6248 0.5555 8 9 ( 3344 1klf_B) ( 5278 1qba ) 0.6231 0.4542 8.4982 ( 0 5 10) 0 0.6240 0.4543 8 11 ( 3344 1klf_B) ( 5520 1r17_A) 0.6248 0.4166 4.7469 ( 0 3 10) 0 0.6402 0.5278 8 12 ( 3344 1klf_B) ( 5521 1r17_A) 0.4998 0.3636 6.3229 ( 0 3 6) 0 0.8677 0.6349 8 11 ( 3344 1klf_B) ( 6068 1uol_A) 0.6235 0.3845 8.0594 ( 0 8 10) 0 0.6235 0.3845 8 13 ( 3344 1klf_B) ( 6119 1uur_A) 0.5137 0.3258 8.7765 ( 1 6 10) 0 0.5137 0.3258 8 15 -------------------------------------------------------------------------------------------------------------------------