------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3803 1m2o_A) ( 34 1a3q_A) 0.3333 0.4000 5.1651 ( 0 4 6) 0 0.5827 0.6985 12 10 ( 3803 1m2o_A) ( 159 1amx ) 0.4162 0.3569 10.1885 ( 0 4 10) 0 0.6652 0.5708 12 14 ( 3803 1m2o_A) ( 169 1aoh_A) 0.4999 0.5453 5.5421 ( 0 5 15) 0 0.6660 0.7263 12 11 ( 3803 1m2o_A) ( 245 1ayo_A) 0.6662 0.7266 5.3919 ( 0 12 28) 0 0.6662 0.7266 12 11 ( 3803 1m2o_A) ( 374 1bg1_A) 0.3018 0.2172 12.8909 ( 1 4 6) 0 0.7650 0.5449 12 18 ( 3803 1m2o_A) ( 1008 1e2w_A) 0.5833 0.6999 3.7908 ( 0 7 21) 0 0.5833 0.6999 12 10 ( 3803 1m2o_A) ( 1040 1e5c_A) 0.5831 0.8736 5.2171 ( 0 9 21) 0 0.6658 0.9935 12 8 ( 3803 1m2o_A) ( 1087 1eaq_A) 0.4044 0.4361 7.9019 ( 1 7 10) 0 0.4999 0.5452 12 11 ( 3803 1m2o_A) ( 1300 1exh ) 0.7486 0.8965 6.2796 ( 0 18 36) 0 0.7486 0.8965 12 10 ( 3803 1m2o_A) ( 1351 1f0l_A) 0.7417 0.5605 6.2827 ( 1 17 36) 0 0.7417 0.5605 12 16 ( 3803 1m2o_A) ( 1689 1g1k_A) 0.7481 0.6910 6.8036 ( 0 15 36) 0 0.7481 0.6910 12 13 ( 3803 1m2o_A) ( 1760 1g87_A) 0.3333 0.3636 6.1675 ( 0 0 6) 0 0.4999 0.5452 12 11 ( 3803 1m2o_A) ( 2097 1h6f_A) 0.3185 0.2785 9.6560 ( 1 5 6) 0 0.3185 0.2785 12 14 ( 3803 1m2o_A) ( 2375 1i31_A) 0.4165 0.2941 7.7301 ( 0 0 10) 0 0.6632 0.4700 12 17 ( 3803 1m2o_A) ( 2769 1j8r_A) 0.5828 0.4997 6.8447 ( 0 7 21) 0 0.5828 0.4997 12 14 ( 3803 1m2o_A) ( 3343 1klf_B) 0.6663 0.6151 5.3660 ( 0 11 28) 0 0.6663 0.6151 12 13 ( 3803 1m2o_A) ( 3344 1klf_B) 0.4999 0.7495 4.8155 ( 0 6 15) 0 0.5831 0.8729 12 8 ( 3803 1m2o_A) ( 3803 1m2o_A) 1.0000 1.0000 0.0000 ( 0 45 66) 0 1.0000 1.0000 12 12 ( 3803 1m2o_A) ( 3986 1mnn_A) 0.3325 0.1818 15.2531 ( 0 2 6) 0 0.3325 0.2735 12 22 ( 3803 1m2o_A) ( 4098 1n12_A) 0.3333 0.4996 7.6654 ( 0 2 6) 0 0.4170 0.4996 12 8 ( 3803 1m2o_A) ( 4141 1n67_A) 0.6655 0.7255 6.9524 ( 0 8 28) 0 0.6655 0.7255 12 11 ( 3803 1m2o_A) ( 4142 1n67_A) 0.3333 0.3077 4.0807 ( 0 4 6) 0 0.5827 0.5380 12 13 ( 3803 1m2o_A) ( 4187 1nbc_A) 0.3333 0.3635 8.2402 ( 0 4 6) 0 0.3333 0.3635 12 11 ( 3803 1m2o_A) ( 4232 1nfi_A) 0.3333 0.4999 4.9988 ( 0 4 6) 0 0.4996 0.7467 12 8 ( 3803 1m2o_A) ( 4570 1o9w_A) 0.6663 0.5332 5.2181 ( 0 10 28) 0 0.7424 0.5975 12 15 ( 3803 1m2o_A) ( 4910 1p5v_B) 0.3333 0.5710 6.5249 ( 0 2 6) 0 0.5281 0.7127 12 7 ( 3803 1m2o_A) ( 4922 1p7h_L) 0.5831 0.6359 5.6877 ( 0 9 21) 0 0.5831 0.6359 12 11 ( 3803 1m2o_A) ( 4976 1pd1_A) 0.7909 0.7909 1.4298 ( 2 24 45) 0 0.7909 0.7909 12 12 ( 3803 1m2o_A) ( 4985 1pdk_B) 0.4999 0.6664 4.7321 ( 0 6 15) 0 0.4999 0.6664 12 9 ( 3803 1m2o_A) ( 5278 1qba ) 0.3333 0.3636 7.0089 ( 0 2 6) 0 0.4998 0.5451 12 11 ( 3803 1m2o_A) ( 5520 1r17_A) 0.4162 0.4162 9.7129 ( 0 0 10) 0 0.6659 0.6659 12 12 ( 3803 1m2o_A) ( 5521 1r17_A) 0.4164 0.4541 8.8869 ( 0 2 10) 0 0.6653 0.7252 12 11 ( 3803 1m2o_A) ( 6068 1uol_A) 0.7458 0.6895 4.9701 ( 1 20 36) 0 0.7458 0.6895 12 13 ( 3803 1m2o_A) ( 6119 1uur_A) 0.4164 0.3333 8.5129 ( 0 3 10) 0 0.4998 0.3999 12 15 -------------------------------------------------------------------------------------------------------------------------