------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4098 1n12_A) ( 34 1a3q_A) 0.6220 0.4990 9.5968 ( 0 7 10) 0 0.6220 0.4990 8 10 ( 4098 1n12_A) ( 159 1amx ) 0.6246 0.3571 5.6792 ( 0 2 10) 0 0.8719 0.4998 8 14 ( 4098 1n12_A) ( 169 1aoh_A) 0.8739 0.6361 4.8881 ( 0 13 21) 0 0.8739 0.6361 8 11 ( 4098 1n12_A) ( 245 1ayo_A) 0.6223 0.4540 9.2811 ( 0 4 10) 0 0.7486 0.5452 8 11 ( 4098 1n12_A) ( 374 1bg1_A) 0.6236 0.2778 7.8978 ( 0 6 10) 0 0.6236 0.3524 8 18 ( 4098 1n12_A) ( 1008 1e2w_A) 0.7472 0.5991 7.4545 ( 0 8 15) 0 0.7472 0.5991 8 10 ( 4098 1n12_A) ( 1040 1e5c_A) 0.4998 0.4998 6.6451 ( 0 3 6) 0 0.4998 0.4998 8 8 ( 4098 1n12_A) ( 1087 1eaq_A) 0.6184 0.4532 11.6983 ( 0 7 10) 0 0.6232 0.4542 8 11 ( 4098 1n12_A) ( 1300 1exh ) 0.8570 0.6939 7.6604 ( 1 18 21) 0 0.8585 0.6944 8 10 ( 4098 1n12_A) ( 1351 1f0l_A) 0.6233 0.3124 8.2887 ( 0 7 10) 0 0.8634 0.4604 8 16 ( 4098 1n12_A) ( 1689 1g1k_A) 0.7463 0.4612 8.0090 ( 0 9 15) 0 0.8733 0.5383 8 13 ( 4098 1n12_A) ( 1760 1g87_A) 0.8499 0.6310 7.8427 ( 1 16 21) 0 0.8499 0.6310 8 11 ( 4098 1n12_A) ( 2097 1h6f_A) 0.4996 0.2857 7.3872 ( 0 4 6) 0 0.5761 0.4095 8 14 ( 4098 1n12_A) ( 2375 1i31_A) 0.4992 0.2353 9.1268 ( 0 0 6) 0 0.7476 0.3529 8 17 ( 4098 1n12_A) ( 2769 1j8r_A) 0.8887 0.5626 6.7270 ( 2 23 28) 0 0.8887 0.5626 8 14 ( 4098 1n12_A) ( 3343 1klf_B) 0.7454 0.4611 8.4853 ( 0 7 15) 0 0.8096 0.5317 8 13 ( 4098 1n12_A) ( 3344 1klf_B) 0.7455 0.7455 8.4217 ( 0 8 15) 0 0.7455 0.7455 8 8 ( 4098 1n12_A) ( 3803 1m2o_A) 0.4996 0.3333 7.6654 ( 0 2 6) 0 0.4996 0.4170 8 12 ( 4098 1n12_A) ( 3986 1mnn_A) 0.4999 0.1818 4.9854 ( 0 5 6) 0 0.4999 0.3192 8 22 ( 4098 1n12_A) ( 4098 1n12_A) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 4098 1n12_A) ( 4141 1n67_A) 0.6241 0.4544 7.0333 ( 0 3 10) 0 0.8668 0.6347 8 11 ( 4098 1n12_A) ( 4142 1n67_A) 0.6248 0.3846 5.0600 ( 0 3 10) 0 0.8733 0.5853 8 13 ( 4098 1n12_A) ( 4187 1nbc_A) 0.6234 0.4542 8.1201 ( 0 7 10) 0 0.6234 0.4542 8 11 ( 4098 1n12_A) ( 4232 1nfi_A) 0.6244 0.6244 6.4376 ( 0 7 10) 0 0.7480 0.7480 8 8 ( 4098 1n12_A) ( 4570 1o9w_A) 0.8733 0.4666 5.4624 ( 0 12 21) 0 0.8733 0.4666 8 15 ( 4098 1n12_A) ( 4910 1p5v_B) 0.8716 0.9934 6.4872 ( 0 13 21) 0 0.8716 0.9934 8 7 ( 4098 1n12_A) ( 4922 1p7h_L) 0.6225 0.4540 9.1476 ( 0 9 10) 0 0.8709 0.6355 8 11 ( 4098 1n12_A) ( 4976 1pd1_A) 0.4982 0.3331 11.0658 ( 0 2 6) 0 0.4982 0.3331 8 12 ( 4098 1n12_A) ( 4985 1pdk_B) 0.7497 0.6665 4.3043 ( 0 7 15) 0 0.7497 0.6665 8 9 ( 4098 1n12_A) ( 5278 1qba ) 0.6224 0.4540 9.2427 ( 0 9 10) 0 0.7458 0.5446 8 11 ( 4098 1n12_A) ( 5520 1r17_A) 0.6242 0.4166 6.8389 ( 0 2 10) 0 0.7477 0.4997 8 12 ( 4098 1n12_A) ( 5521 1r17_A) 0.6245 0.4544 6.0006 ( 0 3 10) 0 0.6245 0.4544 8 11 ( 4098 1n12_A) ( 6068 1uol_A) 0.6232 0.3845 8.4340 ( 0 6 10) 0 0.8728 0.5383 8 13 ( 4098 1n12_A) ( 6119 1uur_A) 0.6203 0.3331 10.6879 ( 0 6 10) 0 0.6203 0.3922 8 15 -------------------------------------------------------------------------------------------------------------------------