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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5521 1r17_A) ( 34 1a3q_A) 0.4544 0.4997 6.8306 ( 0 4 10) 0 0.5454 0.5998 11 10
( 5521 1r17_A) ( 159 1amx ) 0.8176 0.6427 4.4880 ( 0 13 36) 0 0.8176 0.6447 11 14
( 5521 1r17_A) ( 169 1aoh_A) 0.5450 0.5450 7.1574 ( 0 3 15) 0 0.5450 0.5450 11 11
( 5521 1r17_A) ( 245 1ayo_A) 0.8028 0.8028 6.2955 ( 1 16 36) 0 0.8028 0.8028 11 11
( 5521 1r17_A) ( 374 1bg1_A) 0.4545 0.2778 4.7465 ( 0 4 10) 0 0.5453 0.3392 11 18
( 5521 1r17_A) ( 1008 1e2w_A) 0.6362 0.6998 4.1620 ( 0 7 21) 0 0.6362 0.6998 11 10
( 5521 1r17_A) ( 1040 1e5c_A) 0.4545 0.6248 5.0100 ( 0 2 10) 0 0.6361 0.8737 11 8
( 5521 1r17_A) ( 1087 1eaq_A) 0.4542 0.4542 8.1117 ( 0 5 10) 0 0.6362 0.6362 11 11
( 5521 1r17_A) ( 1300 1exh ) 0.4545 0.4999 4.8824 ( 0 4 10) 0 0.7267 0.7990 11 10
( 5521 1r17_A) ( 1351 1f0l_A) 0.9063 0.6246 5.8515 ( 0 26 45) 0 0.9063 0.6246 11 16
( 5521 1r17_A) ( 1689 1g1k_A) 0.4545 0.3846 4.7644 ( 0 5 10) 0 0.7263 0.6150 11 13
( 5521 1r17_A) ( 1760 1g87_A) 0.8137 0.8137 7.5390 ( 0 21 36) 0 0.8141 0.8141 11 11
( 5521 1r17_A) ( 2097 1h6f_A) 0.2727 0.2458 11.7098 ( 1 3 6) 0 0.3751 0.3471 11 14
( 5521 1r17_A) ( 2375 1i31_A) 0.9005 0.5872 7.8097 ( 0 22 45) 0 0.9005 0.5872 11 17
( 5521 1r17_A) ( 2769 1j8r_A) 0.7236 0.5703 8.3028 ( 0 10 28) 0 0.7236 0.5703 11 14
( 5521 1r17_A) ( 3343 1klf_B) 0.4544 0.3846 6.6050 ( 0 6 10) 0 0.5452 0.4628 11 13
( 5521 1r17_A) ( 3344 1klf_B) 0.3636 0.4998 6.3229 ( 0 3 6) 0 0.6349 0.8677 11 8
( 5521 1r17_A) ( 3803 1m2o_A) 0.4541 0.4164 8.8869 ( 0 2 10) 0 0.7252 0.6653 11 12
( 5521 1r17_A) ( 3986 1mnn_A) 0.3635 0.1818 8.8259 ( 0 2 6) 0 0.4833 0.3727 11 22
( 5521 1r17_A) ( 4098 1n12_A) 0.4544 0.6245 6.0006 ( 0 3 10) 0 0.4544 0.6245 11 8
( 5521 1r17_A) ( 4141 1n67_A) 0.8152 0.8152 6.8345 ( 0 15 36) 0 0.8152 0.8152 11 11
( 5521 1r17_A) ( 4142 1n67_A) 0.9084 0.7689 4.2035 ( 0 28 45) 0 0.9084 0.7689 11 13
( 5521 1r17_A) ( 4187 1nbc_A) 0.8144 0.8144 7.2474 ( 0 20 36) 0 0.8144 0.8144 11 11
( 5521 1r17_A) ( 4232 1nfi_A) 0.4545 0.6247 5.3570 ( 0 3 10) 0 0.5450 0.7480 11 8
( 5521 1r17_A) ( 4570 1o9w_A) 0.5454 0.4000 4.8427 ( 0 6 15) 0 0.5575 0.4457 11 15
( 5521 1r17_A) ( 4910 1p5v_B) 0.5442 0.8454 9.1137 ( 0 6 15) 0 0.5442 0.8454 11 7
( 5521 1r17_A) ( 4922 1p7h_L) 0.5445 0.5445 8.4032 ( 0 6 15) 0 0.6362 0.6362 11 11
( 5521 1r17_A) ( 4976 1pd1_A) 0.7267 0.6663 5.1254 ( 0 12 28) 0 0.7267 0.6663 11 12
( 5521 1r17_A) ( 4985 1pdk_B) 0.4544 0.5550 7.1630 ( 0 1 10) 0 0.4544 0.5550 11 9
( 5521 1r17_A) ( 5278 1qba ) 0.7267 0.7267 5.2391 ( 0 13 28) 0 0.7267 0.7267 11 11
( 5521 1r17_A) ( 5520 1r17_A) 0.4542 0.4164 8.5084 ( 0 6 10) 0 0.5183 0.4969 11 12
( 5521 1r17_A) ( 5521 1r17_A) 1.0000 1.0000 0.0000 ( 0 36 55) 0 1.0000 1.0000 11 11
( 5521 1r17_A) ( 6068 1uol_A) 0.5454 0.4615 4.0608 ( 0 10 15) 0 0.8163 0.6915 11 13
( 5521 1r17_A) ( 6119 1uur_A) 0.3635 0.2666 8.5030 ( 0 5 6) 0 0.5562 0.4453 11 15
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