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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5836 1spp_B)  ( 4354 1nqj_A)     0.5453   0.7493   5.3019 (   0    3   15)   0     0.7267   0.9974   11   8
( 5836 1spp_B)  ( 4381 1nt0_A)     0.7272   0.9997   2.8708 (   0    6   28)   0     0.7272   0.9997   11   8
( 5836 1spp_B)  ( 4383 1nt0_A)     0.7272   0.9999   2.3841 (   0    9   28)   0     0.7272   0.9999   11   8
( 5836 1spp_B)  ( 4453 1nzi_A)     0.7272   0.9998   2.5931 (   0    6   28)   0     0.7272   0.9998   11   8
( 5836 1spp_B)  ( 5808 1sfp  )     0.8182   0.9999   0.6476 (   0   12   36)   0     0.8182   0.9999   11   9
( 5836 1spp_B)  ( 5836 1spp_B)     1.0000   1.0000   0.0000 (   0   31   55)   0     1.0000   1.0000   11  11

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