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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  887 1dmz_A)  (  887 1dmz_A)     1.0000   1.0000   0.0000 (   0   23   36)   0     1.0000   1.0000    9   9
(  887 1dmz_A)  ( 1741 1g6g_A)     0.6666   0.6666   3.7529 (   0    2   15)   0     0.6666   0.6666    9   9
(  887 1dmz_A)  ( 1995 1gxc_A)     0.7778   0.7000   1.4290 (   0    8   21)   0     0.7778   0.7000    9  10
(  887 1dmz_A)  ( 3625 1lgp_A)     0.5555   0.7142   2.8386 (   0    1   10)   0     0.5555   0.7142    9   7
(  887 1dmz_A)  ( 3947 1mjs_A)     0.5554   0.3125   5.2512 (   0    1   10)   0     0.8885   0.5000    9  16
(  887 1dmz_A)  ( 4084 1mzk_A)     0.6666   0.8570   3.0148 (   0    1   15)   0     0.6666   0.8570    9   7
(  887 1dmz_A)  ( 5481 1qwt_A)     0.7773   0.4117   4.5624 (   0    7   21)   0     0.7773   0.4117    9  17
(  887 1dmz_A)  ( 5527 1r21_A)     0.5555   0.7140   4.3659 (   0    1   10)   0     0.5555   0.7140    9   7
(  887 1dmz_A)  ( 6022 1uht_A)     0.6658   0.8540   6.5265 (   0    0   15)   0     0.6658   0.8540    9   7
(  887 1dmz_A)  ( 6040 1ujx_A)     0.6666   0.9995   3.3671 (   0    5   15)   0     0.6666   0.9995    9   6

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