------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [4748, 32]: Comparing 1oq1_A and 1a3k, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 14 (1 H + 13 S) secondary structure elements in 1a3k, of which 12 satisfy the size requirements. 2.11138 [ 1.33442] ((10 . 1) (12 . 4) (14 . 5) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 12) (21 . 14)) 5.096 {0/14:36} B:0 3.16726 [ 2.00235] ((12 . 3) (14 . 4) (15 . 5) (17 . 7) (18 . 8) (19 . 9)) 8.382 {0/1:15} B:0 3.80007 [ 2.40029] ((14 . 3) (15 . 4) (17 . 5) (18 . 7) (20 . 9)) 5.713 {0/0:10} B:0 3.80009 [ 2.40036] ((9 . 3) (10 . 4) (12 . 8) (14 . 9) (15 . 10)) 6.012 {0/3:10} B:0 3.80013 [ 2.40052] ((9 . 2) (10 . 3) (14 . 8) (15 . 9) (19 . 14)) 6.582 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.5786 [and 1/min{score2}: 0.9130] [4748, 66]: Comparing 1oq1_A and 1a8d, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 42 (7 H + 35 S) secondary structure elements in 1a8d, of which 20 satisfy the size requirements. 1.27515 [ 1.34062] ((2 . 2) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (9 . 9) (10 . 11) (12 . 14) (14 . 15) (15 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 22)) 5.199 {3/61:105} B:0 2.11129 [ 2.22238] ((2 . 2) (12 . 14) (14 . 15) (15 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21)) 4.613 {0/18:36} B:0 3.17460 [ 3.34014] ((2 . 2) (5 . 5) (7 . 6) (9 . 9) (12 . 14) (21 . 22)) 5.168 {1/10:15} B:0 3.80004 [ 4.00003] ((8 . 11) (10 . 15) (12 . 18) (14 . 19) (17 . 22)) 4.765 {0/4:10} B:0 3.80005 [ 4.00005] ((12 . 7) (14 . 9) (17 . 14) (18 . 15) (19 . 16)) 5.285 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.7842 [and 1/min{score2}: 0.7459] [4748, 413]: Comparing 1oq1_A and 1bk1, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 17 (3 H + 14 S) secondary structure elements in 1bk1, of which 14 satisfy the size requirements. 3.16675 [ 2.33354] ((7 . 5) (8 . 7) (9 . 8) (10 . 9) (15 . 13) (17 . 14)) 5.095 {0/10:15} B:0 3.80012 [ 2.80030] ((5 . 7) (7 . 8) (8 . 9) (9 . 10) (12 . 13)) 6.449 {0/7:10} B:0 3.80012 [ 2.80031] ((15 . 8) (17 . 9) (18 . 10) (20 . 11) (21 . 12)) 6.488 {0/9:10} B:0 3.80013 [ 2.80033] ((9 . 5) (10 . 7) (19 . 14) (20 . 16) (21 . 17)) 6.579 {0/4:10} B:0 3.80018 [ 2.80045] ((12 . 9) (14 . 10) (19 . 13) (20 . 14) (21 . 16)) 7.121 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.3651 [and 1/min{score2}: 0.4285] [4748, 420]: Comparing 1oq1_A and 1bkz_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 13 (1 H + 12 S) secondary structure elements in 1bkz_A, of which 10 satisfy the size requirements. 2.71440 [ 1.42933] ((10 . 1) (14 . 5) (17 . 8) (18 . 9) (19 . 10) (20 . 12) (21 . 13)) 4.915 {0/7:21} B:0 3.16673 [ 1.66711] ((10 . 1) (12 . 4) (14 . 5) (17 . 8) (18 . 9) (19 . 10)) 4.829 {0/1:15} B:0 3.80005 [ 2.00036] ((12 . 2) (14 . 3) (17 . 5) (20 . 9) (21 . 10)) 5.252 {0/3:10} B:0 3.80007 [ 2.00051] ((12 . 2) (14 . 3) (15 . 4) (17 . 5) (20 . 9)) 5.710 {0/1:10} B:0 3.80007 [ 2.00051] ((14 . 1) (17 . 3) (18 . 4) (19 . 5) (21 . 8)) 5.725 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.4736 [and 1/min{score2}: 0.8990] [4748, 529]: Comparing 1oq1_A and 1c4r_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 15 (2 H + 13 S) secondary structure elements in 1c4r_A, of which 14 satisfy the size requirements. 1.58373 [ 1.16767] ((7 . 1) (8 . 2) (9 . 4) (10 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 12) (21 . 13)) 4.517 {0/30:66} B:0 3.16670 [ 2.33341] ((14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (21 . 13)) 3.994 {0/6:15} B:0 3.16687 [ 2.33384] ((12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10)) 6.419 {0/0:15} B:0 3.16699 [ 2.33413] ((12 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (19 . 9)) 7.176 {0/1:15} B:0 3.80005 [ 2.80013] ((9 . 1) (12 . 6) (14 . 7) (15 . 8) (21 . 13)) 5.232 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6314 [and 1/min{score2}: 0.8564] [4748, 736]: Comparing 1oq1_A and 1d2s_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 16 (3 H + 13 S) secondary structure elements in 1d2s_A, of which 13 satisfy the size requirements. 2.71437 [ 1.85741] ((14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 12) (21 . 14)) 4.594 {0/7:21} B:0 3.16699 [ 2.16766] ((12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10)) 7.183 {0/0:15} B:0 3.80006 [ 2.60018] ((7 . 1) (9 . 4) (10 . 5) (14 . 9) (15 . 10)) 5.402 {0/5:10} B:0 3.80020 [ 2.60062] ((14 . 4) (17 . 6) (18 . 7) (19 . 8) (20 . 9)) 7.315 {0/0:10} B:0 3.80025 [ 2.60077] ((5 . 1) (12 . 9) (14 . 10) (15 . 11) (17 . 12)) 7.731 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6835 [and 1/min{score2}: 0.9951] [4748, 840]: Comparing 1oq1_A and 1dhk_B, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 22 (4 H + 18 S) secondary structure elements in 1dhk_B, of which 16 satisfy the size requirements. 1.26775 [ 1.06847] ((2 . 1) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (9 . 10) (10 . 11) (12 . 12) (14 . 13) (15 . 14) (17 . 16) (18 . 17) (19 . 18) (20 . 20) (21 . 22)) 2.738 {2/67:105} B:0 2.37504 [ 2.00007] ((7 . 3) (14 . 13) (15 . 14) (17 . 16) (18 . 17) (19 . 18) (20 . 20) (21 . 22)) 3.537 {0/18:28} B:0 2.71434 [ 2.28580] ((7 . 3) (12 . 12) (14 . 13) (15 . 14) (19 . 18) (20 . 20) (21 . 22)) 4.083 {0/14:21} B:0 2.71687 [ 2.29003] ((4 . 3) (5 . 4) (8 . 6) (9 . 10) (10 . 11) (14 . 16) (15 . 17)) 4.977 {1/15:21} B:0 3.16691 [ 2.66707] ((9 . 11) (10 . 12) (12 . 16) (14 . 17) (15 . 18) (17 . 20)) 6.691 {0/1:15} B:0 SIMILARITY (1/min{score1}): 0.7888 [and 1/min{score2}: 0.9359] [4748, 977]: Comparing 1oq1_A and 1dyp_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 28 (4 H + 24 S) secondary structure elements in 1dyp_A, of which 23 satisfy the size requirements. 2.37518 [ 2.87510] ((4 . 7) (9 . 13) (10 . 14) (15 . 20) (17 . 21) (18 . 22) (19 . 23) (20 . 24)) 4.980 {0/15:28} B:0 3.80009 [ 4.60005] ((7 . 4) (8 . 7) (12 . 14) (15 . 16) (19 . 20)) 6.070 {0/6:10} B:0 3.80020 [ 4.60012] ((7 . 6) (8 . 7) (12 . 14) (15 . 16) (19 . 20)) 7.363 {0/6:10} B:0 3.80022 [ 4.60012] ((4 . 12) (14 . 22) (15 . 23) (17 . 24) (20 . 28)) 7.489 {0/6:10} B:0 3.80025 [ 4.60014] ((7 . 6) (8 . 7) (12 . 14) (15 . 16) (21 . 24)) 7.760 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5641 [and 1/min{score2}: 0.5284] [4748, 1239]: Comparing 1oq1_A and 1epw_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 103 (40 H + 63 S) secondary structure elements in 1epw_A, of which 17 satisfy the size requirements. 1.35769 [ 1.21505] ((2 . 68) (4 . 70) (7 . 72) (8 . 73) (9 . 74) (10 . 76) (12 . 77) (14 . 78) (15 . 79) (17 . 80) (18 . 81) (19 . 82) (20 . 83) (21 . 84)) 4.359 {0/48:91} B:0 1.46184 [ 1.30811] ((2 . 68) (7 . 72) (8 . 73) (9 . 74) (10 . 76) (12 . 77) (14 . 78) (15 . 79) (17 . 80) (18 . 81) (19 . 82) (20 . 83) (21 . 84)) 3.965 {0/40:78} B:0 2.47385 [ 2.25870] ((11 . 75) (14 . 78) (15 . 79) (17 . 80) (18 . 81) (19 . 82) (20 . 83) (21 . 84)) 6.915 {2/13:28} B:0 2.73361 [ 2.45539] ((11 . 75) (12 . 77) (17 . 80) (18 . 81) (19 . 82) (20 . 83) (21 . 84)) 7.058 {1/9:21} B:0 3.16678 [ 2.83349] ((12 . 74) (14 . 76) (15 . 77) (17 . 78) (18 . 79) (21 . 82)) 5.520 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.7365 [and 1/min{score2}: 0.8230] [4748, 1759]: Comparing 1oq1_A and 1g86_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 14 (2 H + 12 S) secondary structure elements in 1g86_A, of which 11 satisfy the size requirements. 1.72747 [ 1.00099] ((8 . 1) (9 . 2) (10 . 4) (12 . 5) (14 . 6) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 13) (21 . 14)) 4.017 {0/24:55} B:0 2.71432 [ 1.57159] ((14 . 6) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 13) (21 . 14)) 3.577 {0/10:21} B:0 3.16673 [ 1.83365] ((10 . 1) (14 . 6) (15 . 8) (17 . 9) (18 . 10) (19 . 11)) 4.773 {0/3:15} B:0 3.16682 [ 1.83415] ((12 . 2) (14 . 4) (15 . 5) (17 . 6) (18 . 8) (20 . 10)) 6.024 {0/4:15} B:0 3.16713 [ 1.83572] ((12 . 4) (14 . 5) (15 . 6) (17 . 8) (18 . 9) (19 . 10)) 7.882 {0/1:15} B:0 SIMILARITY (1/min{score1}): 0.5789 [and 1/min{score2}: 0.9990] [4748, 1968]: Comparing 1oq1_A and 1gv9_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 19 (2 H + 17 S) secondary structure elements in 1gv9_A, of which 16 satisfy the size requirements. 1.35730 [ 1.14312] ((1 . 1) (4 . 4) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (12 . 11) (14 . 12) (15 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 19)) 3.191 {0/58:91} B:0 2.37634 [ 2.00224] ((4 . 4) (9 . 8) (10 . 9) (13 . 13) (15 . 14) (19 . 17) (20 . 18) (21 . 19)) 4.978 {1/20:28} B:0 2.71642 [ 2.28928] ((5 . 6) (9 . 9) (12 . 12) (14 . 14) (17 . 16) (18 . 17) (20 . 19)) 10.288 {0/14:21} B:0 3.16733 [ 2.66778] ((7 . 7) (8 . 8) (9 . 9) (12 . 12) (18 . 17) (20 . 19)) 8.629 {0/9:15} B:0 3.80005 [ 3.20009] ((9 . 7) (10 . 8) (14 . 11) (15 . 12) (21 . 18)) 5.240 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7368 [and 1/min{score2}: 0.8748] [4748, 2019]: Comparing 1oq1_A and 1gzc_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 19 (3 H + 16 S) secondary structure elements in 1gzc_A, of which 14 satisfy the size requirements. 1.46172 [ 1.07738] ((2 . 1) (4 . 2) (8 . 5) (9 . 7) (10 . 8) (12 . 11) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 19)) 3.489 {0/34:78} B:0 3.16685 [ 2.33380] ((2 . 2) (9 . 7) (10 . 8) (12 . 11) (17 . 14) (18 . 15)) 6.284 {0/4:15} B:0 3.16700 [ 2.33416] ((2 . 2) (8 . 5) (9 . 7) (10 . 8) (12 . 11) (17 . 14)) 7.241 {0/7:15} B:0 3.16710 [ 2.33441] ((8 . 2) (12 . 8) (17 . 11) (18 . 12) (19 . 13) (20 . 14)) 7.743 {0/6:15} B:0 3.80001 [ 2.80002] ((2 . 5) (12 . 14) (14 . 15) (15 . 16) (17 . 18)) 3.457 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6841 [and 1/min{score2}: 0.9282] [4748, 2024]: Comparing 1oq1_A and 1gzw_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 13 (0 H + 13 S) secondary structure elements in 1gzw_A, of which 11 satisfy the size requirements. 3.11412 [ 3.01359] ((2 . 1) (9 . 2) (10 . 3) (12 . 4) (14 . 6) (17 . 9) (18 . 10) (19 . 11) (20 . 12) (21 . 13)) 5.489 {6/20:45} B:0 3.80004 [ 2.20020] ((8 . 2) (9 . 3) (12 . 9) (14 . 10) (15 . 11)) 4.836 {0/6:10} B:0 3.80007 [ 2.20036] ((10 . 1) (17 . 9) (18 . 10) (20 . 12) (21 . 13)) 5.645 {0/3:10} B:0 3.80007 [ 2.20038] ((10 . 1) (12 . 4) (17 . 9) (18 . 10) (19 . 11)) 5.695 {0/1:10} B:0 3.80011 [ 2.20059] ((8 . 1) (9 . 2) (10 . 3) (14 . 9) (15 . 10)) 6.372 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.5786 [and 1/min{score2}: 0.9947] [4748, 2030]: Comparing 1oq1_A and 1h0b_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 21 (3 H + 18 S) secondary structure elements in 1h0b_A, of which 17 satisfy the size requirements. 3.16679 [ 2.83351] ((4 . 6) (9 . 11) (10 . 12) (12 . 13) (15 . 16) (17 . 17)) 5.714 {0/9:15} B:0 3.16705 [ 2.83386] ((4 . 6) (9 . 11) (10 . 12) (15 . 16) (17 . 17) (18 . 19)) 7.501 {0/9:15} B:0 3.17212 [ 2.84093] ((4 . 4) (5 . 5) (7 . 6) (12 . 13) (20 . 19) (21 . 21)) 5.213 {1/11:15} B:0 3.80008 [ 3.40011] ((4 . 1) (8 . 5) (9 . 6) (14 . 12) (15 . 13)) 5.743 {0/7:10} B:0 3.80010 [ 3.40014] ((5 . 14) (7 . 15) (8 . 16) (9 . 17) (10 . 19)) 6.210 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.4864 [and 1/min{score2}: 0.5247] [4748, 2052]: Comparing 1oq1_A and 1h30_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 39 (6 H + 33 S) secondary structure elements in 1h30_A, of which 16 satisfy the size requirements. 1.58364 [ 1.33384] ((7 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 9) (14 . 10) (15 . 11) (17 . 12) (18 . 13) (19 . 14) (20 . 17) (21 . 19)) 4.219 {0/31:66} B:0 3.16691 [ 2.66708] ((5 . 5) (9 . 8) (10 . 9) (12 . 12) (14 . 13) (15 . 14)) 6.725 {0/8:15} B:0 3.80011 [ 3.20018] ((10 . 6) (14 . 10) (15 . 11) (20 . 17) (21 . 19)) 6.244 {0/4:10} B:0 3.80011 [ 3.20019] ((9 . 7) (10 . 8) (12 . 11) (14 . 12) (15 . 13)) 6.362 {0/4:10} B:0 3.80013 [ 3.20021] ((14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11)) 6.555 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.6315 [and 1/min{score2}: 0.7497] [4748, 2053]: Comparing 1oq1_A and 1h30_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 39 (6 H + 33 S) secondary structure elements in 1h30_A, of which 12 satisfy the size requirements. 3.16668 [ 2.00007] ((12 . 27) (14 . 28) (15 . 29) (17 . 30) (18 . 31) (21 . 36)) 3.454 {0/6:15} B:0 3.16681 [ 2.00056] ((12 . 24) (14 . 25) (15 . 27) (17 . 28) (18 . 29) (20 . 31)) 5.857 {0/1:15} B:0 3.16749 [ 2.00325] ((5 . 22) (9 . 25) (10 . 27) (12 . 30) (14 . 31) (17 . 35)) 9.094 {0/5:15} B:0 3.80002 [ 2.40010] ((12 . 25) (14 . 28) (15 . 29) (17 . 30) (18 . 31)) 4.326 {0/1:10} B:0 3.80003 [ 2.40010] ((12 . 27) (14 . 28) (15 . 29) (20 . 35) (21 . 36)) 4.400 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.4475 [and 1/min{score2}: 0.6656] [4748, 2076]: Comparing 1oq1_A and 1h4g_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 20 (2 H + 18 S) secondary structure elements in 1h4g_A, of which 17 satisfy the size requirements. 2.71449 [ 2.42885] ((4 . 3) (5 . 4) (7 . 5) (8 . 6) (15 . 14) (17 . 15) (21 . 19)) 5.711 {0/14:21} B:0 3.16673 [ 2.83342] ((4 . 3) (7 . 5) (8 . 6) (9 . 8) (15 . 14) (17 . 15)) 4.704 {0/11:15} B:0 3.16677 [ 2.83348] ((7 . 5) (8 . 6) (9 . 8) (14 . 13) (15 . 14) (17 . 15)) 5.469 {0/11:15} B:0 3.16680 [ 2.83352] ((5 . 4) (7 . 5) (8 . 6) (14 . 13) (15 . 14) (17 . 15)) 5.769 {0/10:15} B:0 3.80018 [ 3.40025] ((17 . 3) (18 . 4) (19 . 5) (20 . 6) (21 . 8)) 7.108 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6209 [and 1/min{score2}: 0.6876] [4748, 2523]: Comparing 1oq1_A and 1ikp_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 52 (27 H + 25 S) secondary structure elements in 1ikp_A, of which 21 satisfy the size requirements. 3.16681 [ 3.50011] ((14 . 8) (15 . 9) (17 . 10) (18 . 11) (20 . 15) (21 . 16)) 5.897 {0/9:15} B:0 3.16683 [ 3.50012] ((10 . 3) (12 . 7) (14 . 8) (15 . 9) (20 . 15) (21 . 16)) 6.090 {0/7:15} B:0 3.16714 [ 3.50035] ((9 . 6) (10 . 7) (12 . 10) (14 . 11) (15 . 13) (17 . 15)) 7.905 {0/5:15} B:0 3.80006 [ 4.20005] ((10 . 3) (14 . 8) (15 . 9) (17 . 10) (18 . 11)) 5.519 {0/2:10} B:0 3.80012 [ 4.20009] ((17 . 7) (18 . 8) (19 . 9) (20 . 10) (21 . 11)) 6.391 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7313 [and 1/min{score2}: 0.6633] [4748, 2592]: Comparing 1oq1_A and 1is3_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 13 (0 H + 13 S) secondary structure elements in 1is3_A, of which 12 satisfy the size requirements. 1.72756 [ 1.09203] ((8 . 1) (9 . 3) (10 . 4) (12 . 5) (14 . 6) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 12) (21 . 13)) 4.422 {0/25:55} B:0 3.16682 [ 2.00059] ((8 . 3) (9 . 4) (10 . 5) (12 . 9) (14 . 10) (15 . 11)) 5.934 {0/8:15} B:0 3.80007 [ 2.40026] ((14 . 4) (15 . 5) (17 . 6) (18 . 8) (20 . 10)) 5.559 {0/4:10} B:0 3.80008 [ 2.40030] ((14 . 1) (17 . 4) (18 . 5) (19 . 6) (21 . 9)) 5.732 {0/2:10} B:0 3.80008 [ 2.40033] ((14 . 4) (15 . 5) (17 . 6) (20 . 10) (21 . 11)) 5.888 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5789 [and 1/min{score2}: 0.9157] [4748, 2701]: Comparing 1oq1_A and 1j1t_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 20 (5 H + 15 S) secondary structure elements in 1j1t_A, of which 17 satisfy the size requirements. 3.16730 [ 2.83422] ((4 . 6) (9 . 10) (10 . 11) (14 . 15) (15 . 16) (17 . 17)) 8.526 {0/7:15} B:0 3.80007 [ 3.40009] ((12 . 9) (14 . 10) (15 . 11) (17 . 12) (20 . 15)) 5.583 {0/2:10} B:0 3.80011 [ 3.40015] ((12 . 10) (14 . 11) (17 . 13) (18 . 14) (19 . 15)) 6.268 {0/0:10} B:0 3.80012 [ 3.40017] ((12 . 9) (14 . 10) (15 . 11) (17 . 12) (21 . 16)) 6.476 {0/2:10} B:0 3.80023 [ 3.40032] ((1 . 4) (9 . 11) (10 . 12) (12 . 15) (14 . 16)) 7.564 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7550 [and 1/min{score2}: 0.8256] [4748, 2873]: Comparing 1oq1_A and 1jhn_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 23 (4 H + 19 S) secondary structure elements in 1jhn_A, of which 16 satisfy the size requirements. 1.46269 [ 1.23269] ((5 . 2) (7 . 3) (8 . 4) (9 . 5) (10 . 7) (12 . 9) (14 . 10) (15 . 11) (17 . 13) (18 . 14) (19 . 15) (20 . 21) (21 . 22)) 5.541 {0/47:78} B:0 2.71443 [ 2.28595] ((5 . 2) (12 . 9) (14 . 10) (15 . 11) (17 . 13) (18 . 14) (19 . 15)) 5.207 {0/9:21} B:0 2.84854 [ 2.81413] ((7 . 2) (8 . 4) (9 . 5) (10 . 7) (12 . 9) (14 . 10) (15 . 11) (17 . 13) (18 . 14) (19 . 15) (20 . 21) (21 . 22)) 5.850 {10/36:66} B:0 3.16672 [ 2.66675] ((7 . 3) (8 . 4) (9 . 5) (17 . 13) (18 . 14) (19 . 15)) 4.540 {0/8:15} B:0 3.16757 [ 2.66817] ((14 . 7) (15 . 9) (17 . 10) (18 . 11) (19 . 13) (20 . 14)) 9.306 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.6837 [and 1/min{score2}: 0.8112] [4748, 3314]: Comparing 1oq1_A and 1kit, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 74 (9 H + 65 S) secondary structure elements in 1kit, of which 18 satisfy the size requirements. 1.94602 [ 1.92324] ((2 . 1) (5 . 3) (7 . 4) (8 . 5) (9 . 7) (10 . 9) (12 . 10) (14 . 11) (15 . 12) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 20)) 6.063 {8/44:91} B:0 2.74437 [ 2.60667] ((14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 20)) 4.321 {1/8:21} B:0 3.16675 [ 3.00010] ((10 . 5) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 20)) 5.098 {0/5:15} B:0 3.16684 [ 3.00021] ((5 . 3) (7 . 4) (9 . 7) (10 . 9) (14 . 14) (15 . 15)) 6.176 {0/10:15} B:0 3.80028 [ 3.60033] ((1 . 1) (5 . 3) (7 . 4) (14 . 14) (15 . 15)) 7.957 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6310 [and 1/min{score2}: 0.6659] [4748, 3316]: Comparing 1oq1_A and 1kit, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 74 (9 H + 65 S) secondary structure elements in 1kit, of which 21 satisfy the size requirements. 2.71472 [ 3.00032] ((5 . 32) (8 . 34) (9 . 35) (10 . 36) (12 . 40) (14 . 41) (15 . 42)) 6.918 {0/13:21} B:0 3.16685 [ 3.50013] ((7 . 32) (9 . 34) (10 . 35) (14 . 40) (15 . 41) (19 . 45)) 6.226 {0/8:15} B:0 3.16725 [ 3.50043] ((15 . 33) (17 . 34) (18 . 35) (19 . 36) (20 . 37) (21 . 38)) 8.354 {0/8:15} B:0 3.16823 [ 3.50116] ((14 . 33) (15 . 34) (17 . 35) (18 . 36) (20 . 38) (21 . 40)) 10.684 {0/7:15} B:0 3.80005 [ 4.20004] ((7 . 32) (8 . 33) (9 . 34) (10 . 35) (14 . 40)) 5.258 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8373 [and 1/min{score2}: 0.7590] [4748, 3405]: Comparing 1oq1_A and 1kqr_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 16 (2 H + 14 S) secondary structure elements in 1kqr_A, of which 16 satisfy the size requirements. 1.61077 [ 1.37817] ((2 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 5) (14 . 8) (15 . 9) (17 . 10) (18 . 11) (19 . 12) (20 . 14) (21 . 15)) 5.582 {3/37:66} B:0 1.78830 [ 1.55203] ((8 . 2) (9 . 3) (10 . 4) (12 . 5) (14 . 8) (15 . 9) (17 . 10) (18 . 11) (19 . 12) (20 . 14) (21 . 15)) 4.838 {3/28:55} B:0 2.71205 [ 2.65480] ((2 . 2) (9 . 3) (10 . 4) (12 . 5) (14 . 8) (15 . 9) (17 . 10) (18 . 11) (19 . 12) (20 . 14) (21 . 15)) 5.922 {7/27:55} B:0 3.80004 [ 3.20007] ((8 . 3) (9 . 4) (10 . 5) (12 . 8) (14 . 9)) 4.874 {0/5:10} B:0 3.80004 [ 3.20007] ((12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9)) 5.012 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6208 [and 1/min{score2}: 0.7256] [4748, 4019]: Comparing 1oq1_A and 1ms9_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 17 satisfy the size requirements. 3.16677 [ 2.83347] ((8 . 35) (10 . 39) (17 . 46) (18 . 47) (20 . 50) (21 . 51)) 5.369 {0/8:15} B:0 3.16679 [ 2.83351] ((5 . 37) (7 . 38) (9 . 42) (10 . 43) (14 . 46) (15 . 47)) 5.703 {0/10:15} B:0 3.80005 [ 3.40008] ((4 . 35) (8 . 38) (10 . 42) (17 . 47) (20 . 51)) 5.274 {0/7:10} B:0 3.80015 [ 3.40020] ((12 . 39) (14 . 42) (15 . 43) (17 . 44) (18 . 45)) 6.766 {0/0:10} B:0 3.80021 [ 3.40029] ((12 . 34) (14 . 35) (15 . 36) (17 . 39) (18 . 42)) 7.371 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.6604 [and 1/min{score2}: 0.7250] [4748, 4050]: Comparing 1oq1_A and 1mve_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 21 (4 H + 17 S) secondary structure elements in 1mve_A, of which 18 satisfy the size requirements. 3.16700 [ 3.00039] ((9 . 3) (10 . 4) (12 . 8) (14 . 9) (15 . 10) (17 . 12)) 7.254 {0/5:15} B:0 3.80006 [ 3.60007] ((12 . 2) (14 . 3) (17 . 5) (20 . 9) (21 . 10)) 5.417 {0/3:10} B:0 3.80006 [ 3.60008] ((12 . 2) (14 . 3) (15 . 4) (17 . 5) (20 . 9)) 5.515 {0/2:10} B:0 3.80010 [ 3.60011] ((12 . 2) (14 . 3) (15 . 4) (17 . 5) (21 . 10)) 6.098 {0/4:10} B:0 3.80010 [ 3.60012] ((7 . 8) (10 . 12) (14 . 17) (15 . 18) (17 . 21)) 6.148 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7884 [and 1/min{score2}: 0.8320] [4748, 4302]: Comparing 1oq1_A and 1nls, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 19 (3 H + 16 S) secondary structure elements in 1nls, of which 16 satisfy the size requirements. 3.80012 [ 3.20019] ((10 . 1) (12 . 5) (14 . 6) (15 . 7) (17 . 9)) 6.397 {0/1:10} B:0 3.80013 [ 3.20021] ((12 . 5) (14 . 6) (15 . 7) (17 . 9) (18 . 10)) 6.534 {0/2:10} B:0 3.80017 [ 3.20028] ((12 . 3) (14 . 4) (15 . 5) (17 . 6) (18 . 7)) 6.997 {0/1:10} B:0 3.80017 [ 3.20028] ((17 . 1) (18 . 3) (19 . 4) (20 . 5) (21 . 6)) 7.011 {0/2:10} B:0 3.80021 [ 3.20036] ((10 . 1) (14 . 6) (15 . 7) (17 . 9) (21 . 12)) 7.433 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7891 [and 1/min{score2}: 0.9367] [4748, 4488]: Comparing 1oq1_A and 1o4y_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 30 (9 H + 21 S) secondary structure elements in 1o4y_A, of which 22 satisfy the size requirements. 2.71688 [ 3.14453] ((3 . 4) (5 . 8) (7 . 9) (9 . 12) (10 . 13) (15 . 21) (20 . 27)) 5.071 {1/15:21} B:0 3.16671 [ 3.66670] ((7 . 9) (8 . 11) (9 . 12) (10 . 13) (18 . 24) (20 . 27)) 4.399 {0/7:15} B:0 3.16672 [ 3.66670] ((5 . 8) (7 . 9) (9 . 12) (10 . 13) (18 . 24) (20 . 27)) 4.500 {0/10:15} B:0 3.16680 [ 3.66675] ((1 . 8) (12 . 23) (14 . 24) (15 . 25) (17 . 27) (20 . 30)) 5.732 {0/9:15} B:0 3.16691 [ 3.66682] ((4 . 1) (12 . 12) (15 . 15) (17 . 18) (20 . 24) (21 . 25)) 6.695 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.7342 [and 1/min{score2}: 0.6351] [4748, 4677]: Comparing 1oq1_A and 1ojj_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 37 (12 H + 25 S) secondary structure elements in 1ojj_A, of which 27 satisfy the size requirements. 2.37702 [ 2.67586] ((2 . 2) (7 . 10) (8 . 11) (9 . 13) (10 . 14) (12 . 20) (14 . 21) (17 . 27) (18 . 28) (19 . 29) (20 . 33) (21 . 37)) 5.222 {9/40:66} B:0 3.16682 [ 4.50005] ((7 . 9) (8 . 10) (9 . 11) (10 . 13) (17 . 20) (18 . 21)) 5.972 {0/9:15} B:0 3.16691 [ 4.50008] ((7 . 9) (8 . 10) (9 . 11) (12 . 14) (17 . 20) (18 . 21)) 6.707 {0/10:15} B:0 3.80002 [ 5.40001] ((5 . 9) (7 . 10) (8 . 11) (17 . 21) (21 . 27)) 3.977 {0/7:10} B:0 3.80010 [ 5.40004] ((8 . 20) (9 . 21) (12 . 27) (14 . 28) (15 . 29)) 6.170 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.5260 [and 1/min{score2}: 0.4083] [4748, 4695]: Comparing 1oq1_A and 1okq_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 31 (1 H + 30 S) secondary structure elements in 1okq_A, of which 13 satisfy the size requirements. 1.58359 [ 1.08412] ((7 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12)) 4.024 {0/30:66} B:0 2.71433 [ 1.85727] ((14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12)) 3.816 {0/9:21} B:0 3.16689 [ 2.16736] ((12 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (19 . 9)) 6.565 {0/0:15} B:0 3.16727 [ 2.16853] ((5 . 1) (10 . 5) (12 . 8) (14 . 9) (15 . 10) (17 . 11)) 8.403 {0/7:15} B:0 3.80005 [ 2.60017] ((7 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 7)) 5.260 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6841 [and 1/min{score2}: 0.9990] [4748, 4696]: Comparing 1oq1_A and 1okq_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 31 (1 H + 30 S) secondary structure elements in 1okq_A, of which 15 satisfy the size requirements. 2.71438 [ 2.14305] ((12 . 19) (14 . 20) (15 . 21) (17 . 22) (18 . 23) (19 . 24) (21 . 26)) 4.718 {0/7:21} B:0 3.16684 [ 2.50036] ((12 . 18) (14 . 19) (15 . 20) (17 . 21) (18 . 22) (19 . 23)) 6.206 {0/0:15} B:0 3.80006 [ 3.00012] ((10 . 19) (12 . 22) (14 . 23) (15 . 24) (20 . 27)) 5.453 {0/2:10} B:0 3.80007 [ 3.00014] ((8 . 16) (9 . 17) (10 . 18) (14 . 22) (15 . 23)) 5.606 {0/5:10} B:0 3.80012 [ 3.00024] ((9 . 17) (10 . 18) (12 . 21) (14 . 22) (15 . 23)) 6.425 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.4306 [and 1/min{score2}: 0.4666] [4748, 4701]: Comparing 1oq1_A and 1olr_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 21 (4 H + 17 S) secondary structure elements in 1olr_A, of which 19 satisfy the size requirements. 3.16670 [ 3.16670] ((8 . 8) (9 . 10) (10 . 11) (12 . 12) (15 . 15) (17 . 16)) 4.072 {0/8:15} B:0 3.16703 [ 3.16703] ((4 . 1) (9 . 7) (10 . 8) (12 . 10) (14 . 11) (15 . 12)) 7.402 {0/10:15} B:0 3.80007 [ 3.80007] ((4 . 7) (9 . 10) (10 . 11) (15 . 15) (17 . 16)) 5.636 {0/7:10} B:0 3.80013 [ 3.80013] ((5 . 13) (7 . 14) (8 . 15) (9 . 16) (10 . 18)) 6.625 {0/7:10} B:0 3.80014 [ 3.80014] ((14 . 8) (15 . 10) (17 . 11) (18 . 12) (21 . 14)) 6.752 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6304 [and 1/min{score2}: 0.6304] [4748, 4748]: Comparing 1oq1_A and 1oq1_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21)) 0.000 {0/138:171} B:0 2.71540 [ 2.71540] ((7 . 8) (8 . 9) (9 . 10) (12 . 14) (14 . 15) (18 . 19) (20 . 21)) 8.736 {0/13:21} B:0 2.71540 [ 2.71540] ((8 . 7) (9 . 8) (10 . 9) (14 . 12) (15 . 14) (19 . 18) (21 . 20)) 8.736 {0/13:21} B:0 2.71575 [ 2.71575] ((5 . 7) (7 . 8) (9 . 10) (14 . 15) (17 . 18) (18 . 19) (20 . 21)) 9.355 {0/15:21} B:0 2.71575 [ 2.71575] ((7 . 5) (8 . 7) (10 . 9) (15 . 14) (18 . 17) (19 . 18) (21 . 20)) 9.355 {0/15:21} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [4748, 5155]: Comparing 1oq1_A and 1pz7_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 16 (1 H + 15 S) secondary structure elements in 1pz7_A, of which 14 satisfy the size requirements. 1.58387 [ 1.16801] ((7 . 1) (8 . 2) (9 . 4) (10 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 13) (21 . 15)) 4.869 {0/30:66} B:0 1.72764 [ 1.27364] ((7 . 1) (9 . 4) (10 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 13) (21 . 15)) 4.710 {0/24:55} B:0 2.71436 [ 2.00018] ((12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (21 . 15)) 4.413 {0/7:21} B:0 2.71441 [ 2.00031] ((14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 13) (21 . 15)) 5.057 {0/8:21} B:0 3.16697 [ 2.33408] ((12 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (19 . 9)) 7.069 {0/1:15} B:0 SIMILARITY (1/min{score1}): 0.6314 [and 1/min{score2}: 0.8562] [4748, 5186]: Comparing 1oq1_A and 1q2b_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 42 (9 H + 33 S) secondary structure elements in 1q2b_A, of which 28 satisfy the size requirements. 3.16687 [ 4.66673] ((4 . 11) (8 . 14) (9 . 17) (10 . 18) (17 . 26) (21 . 31)) 6.407 {0/10:15} B:0 3.80010 [ 5.60003] ((8 . 25) (12 . 31) (14 . 32) (15 . 33) (17 . 35)) 6.224 {0/4:10} B:0 3.80014 [ 5.60004] ((9 . 26) (12 . 31) (14 . 32) (15 . 33) (17 . 35)) 6.728 {0/3:10} B:0 3.80016 [ 5.60005] ((1 . 10) (9 . 18) (14 . 25) (15 . 26) (20 . 31)) 6.954 {0/5:10} B:0 3.80016 [ 5.60005] ((7 . 10) (8 . 11) (9 . 14) (10 . 17) (12 . 18)) 6.975 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5867 [and 1/min{score2}: 0.4666] [4748, 5751]: Comparing 1oq1_A and 1s2b_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 22 (0 H + 22 S) secondary structure elements in 1s2b_A, of which 19 satisfy the size requirements. 3.16673 [ 3.16673] ((10 . 2) (14 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 11)) 4.823 {0/4:15} B:0 3.16708 [ 3.16708] ((9 . 5) (10 . 6) (12 . 8) (14 . 9) (15 . 10) (17 . 11)) 7.638 {0/5:15} B:0 3.80002 [ 3.80002] ((12 . 8) (14 . 9) (15 . 10) (17 . 11) (20 . 16)) 3.834 {0/1:10} B:0 3.80007 [ 3.80007] ((2 . 7) (10 . 11) (14 . 18) (15 . 21) (17 . 22)) 5.627 {0/4:10} B:0 3.80010 [ 3.80010] ((8 . 9) (10 . 11) (14 . 18) (15 . 21) (17 . 22)) 6.156 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5787 [and 1/min{score2}: 0.5787] [4748, 5784]: Comparing 1oq1_A and 1sac_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 18 (2 H + 16 S) secondary structure elements in 1sac_A, of which 14 satisfy the size requirements. 3.16669 [ 2.33338] ((14 . 6) (15 . 7) (17 . 8) (18 . 9) (20 . 12) (21 . 14)) 3.537 {0/8:15} B:0 3.16701 [ 2.33419] ((5 . 1) (8 . 3) (9 . 4) (10 . 5) (12 . 8) (14 . 9)) 7.301 {0/9:15} B:0 3.80005 [ 2.80012] ((7 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 7)) 5.078 {0/6:10} B:0 3.80006 [ 2.80015] ((7 . 1) (9 . 3) (10 . 4) (14 . 8) (15 . 9)) 5.445 {0/5:10} B:0 3.80008 [ 2.80020] ((12 . 2) (14 . 3) (17 . 5) (18 . 6) (19 . 7)) 5.815 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.4736 [and 1/min{score2}: 0.6427] [4748, 6047]: Comparing 1oq1_A and 1ule_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 12 (0 H + 12 S) secondary structure elements in 1ule_A, of which 12 satisfy the size requirements. 1.58396 [ 1.00250] ((7 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12)) 5.062 {0/33:66} B:0 2.11141 [ 1.33452] ((10 . 2) (12 . 5) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12)) 5.208 {0/13:36} B:0 3.16743 [ 2.00304] ((8 . 1) (10 . 3) (12 . 6) (17 . 9) (18 . 10) (20 . 12)) 8.938 {0/8:15} B:0 3.16775 [ 2.00429] ((12 . 1) (15 . 3) (17 . 4) (18 . 5) (19 . 6) (21 . 8)) 9.744 {0/3:15} B:0 3.80003 [ 2.40011] ((7 . 2) (8 . 3) (9 . 4) (12 . 8) (14 . 9)) 4.464 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6313 [and 1/min{score2}: 0.9975] [4748, 6056]: Comparing 1oq1_A and 1umz_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 27 (11 H + 16 S) secondary structure elements in 1umz_A, of which 18 satisfy the size requirements. 1.35746 [ 1.28609] ((4 . 2) (5 . 4) (7 . 6) (8 . 7) (9 . 9) (10 . 10) (12 . 11) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 21)) 3.799 {0/52:91} B:0 2.11129 [ 2.00021] ((7 . 2) (12 . 11) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 21)) 4.598 {0/19:36} B:0 2.71446 [ 2.57163] ((4 . 2) (5 . 4) (7 . 6) (9 . 9) (10 . 10) (14 . 14) (15 . 15)) 5.500 {0/13:21} B:0 3.16673 [ 3.00007] ((10 . 7) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16)) 4.796 {0/2:15} B:0 3.16679 [ 3.00014] ((9 . 10) (12 . 14) (14 . 15) (15 . 16) (17 . 18) (20 . 21)) 5.639 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.7367 [and 1/min{score2}: 0.7776] [4748, 6137]: Comparing 1oq1_A and 1ux6_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 23 (6 H + 17 S) secondary structure elements in 1ux6_A, of which 14 satisfy the size requirements. 1.46198 [ 1.07804] ((4 . 6) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (12 . 12) (14 . 15) (15 . 17) (17 . 18) (18 . 19) (19 . 20) (20 . 22) (21 . 23)) 4.373 {0/50:78} B:0 2.71463 [ 2.00086] ((5 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (12 . 15) (14 . 17)) 6.517 {0/14:21} B:0 3.16684 [ 2.33378] ((1 . 8) (10 . 15) (12 . 17) (14 . 18) (15 . 19) (19 . 23)) 6.194 {0/8:15} B:0 3.16693 [ 2.33400] ((1 . 6) (9 . 12) (12 . 17) (14 . 18) (15 . 19) (19 . 23)) 6.873 {0/9:15} B:0 3.16702 [ 2.33421] ((1 . 8) (9 . 12) (10 . 15) (12 . 17) (14 . 18) (15 . 19)) 7.356 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.6840 [and 1/min{score2}: 0.9276] [4748, 6143]: Comparing 1oq1_A and 1uyp_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 38 (3 H + 35 S) secondary structure elements in 1uyp_A, of which 13 satisfy the size requirements. 1.58346 [ 1.08374] ((2 . 27) (8 . 28) (9 . 29) (10 . 30) (12 . 31) (14 . 32) (15 . 33) (17 . 34) (18 . 35) (19 . 36) (20 . 37) (21 . 38)) 3.406 {0/24:66} B:0 3.80009 [ 2.60028] ((12 . 29) (17 . 34) (18 . 35) (19 . 36) (21 . 38)) 6.019 {0/2:10} B:0 3.80011 [ 2.60036] ((9 . 31) (10 . 32) (12 . 35) (14 . 36) (17 . 38)) 6.372 {0/1:10} B:0 3.80014 [ 2.60044] ((14 . 31) (15 . 32) (17 . 33) (18 . 34) (19 . 35)) 6.729 {0/0:10} B:0 3.80036 [ 2.60112] ((8 . 27) (9 . 28) (10 . 29) (17 . 37) (18 . 38)) 8.468 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6315 [and 1/min{score2}: 0.9227] [4748, 6185]: Comparing 1oq1_A and 1v6i_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 19 (3 H + 16 S) secondary structure elements in 1v6i_A, of which 14 satisfy the size requirements. 1.46167 [ 1.07726] ((2 . 1) (4 . 2) (8 . 5) (9 . 7) (10 . 8) (12 . 10) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 18) (21 . 19)) 3.243 {0/41:78} B:0 3.16690 [ 2.33391] ((2 . 5) (12 . 14) (14 . 15) (15 . 16) (17 . 18) (18 . 19)) 6.630 {0/6:15} B:0 3.16707 [ 2.33435] ((8 . 2) (12 . 8) (17 . 10) (18 . 12) (19 . 13) (20 . 14)) 7.625 {0/8:15} B:0 3.16722 [ 2.33471] ((4 . 5) (8 . 7) (9 . 8) (12 . 12) (14 . 13) (20 . 19)) 8.237 {0/9:15} B:0 3.80004 [ 2.80010] ((9 . 5) (10 . 7) (12 . 8) (14 . 10) (15 . 12)) 4.918 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6841 [and 1/min{score2}: 0.9283] [4748, 6397]: Comparing 1oq1_A and 2ayh, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 20 (4 H + 16 S) secondary structure elements in 2ayh, of which 15 satisfy the size requirements. 2.37503 [ 1.87506] ((12 . 11) (14 . 12) (15 . 13) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 3.207 {0/14:28} B:0 2.37520 [ 1.87540] ((7 . 2) (14 . 12) (15 . 13) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 5.129 {0/16:28} B:0 3.16671 [ 2.50008] ((2 . 1) (4 . 2) (12 . 11) (14 . 12) (15 . 13) (21 . 20)) 4.262 {0/10:15} B:0 3.16693 [ 2.50054] ((9 . 9) (10 . 11) (12 . 15) (14 . 16) (15 . 17) (17 . 18)) 6.863 {0/5:15} B:0 3.16695 [ 2.50057] ((5 . 6) (7 . 7) (9 . 9) (10 . 11) (14 . 16) (15 . 17)) 6.959 {0/11:15} B:0 SIMILARITY (1/min{score1}): 0.6306 [and 1/min{score2}: 0.7970] [4748, 6500]: Comparing 1oq1_A and 2nlr_A, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 20 (2 H + 18 S) secondary structure elements in 2nlr_A, of which 17 satisfy the size requirements. 3.16681 [ 2.83353] ((4 . 3) (5 . 4) (7 . 5) (12 . 12) (20 . 18) (21 . 20)) 5.847 {0/10:15} B:0 3.16698 [ 2.83377] ((4 . 1) (8 . 4) (9 . 5) (12 . 10) (14 . 11) (15 . 12)) 7.154 {0/11:15} B:0 3.17408 [ 2.84366] ((1 . 1) (4 . 3) (7 . 5) (12 . 12) (20 . 18) (21 . 20)) 13.195 {1/12:15} B:0 3.80005 [ 3.40007] ((4 . 5) (12 . 12) (14 . 14) (15 . 15) (17 . 16)) 5.154 {0/6:10} B:0 3.80005 [ 3.40007] ((4 . 5) (9 . 10) (10 . 11) (15 . 15) (17 . 16)) 5.192 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6306 [and 1/min{score2}: 0.7041] [4748, 6532]: Comparing 1oq1_A and 2sli, based on their crossing files. There are 21 (5 H + 16 S) secondary structure elements in 1oq1_A, of which 19 satisfy the size requirements. There are 61 (9 H + 52 S) secondary structure elements in 2sli, of which 15 satisfy the size requirements. 1.72749 [ 1.36408] ((2 . 1) (9 . 4) (10 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 11) (18 . 12) (19 . 13) (20 . 15) (21 . 18)) 4.153 {0/22:55} B:0 2.71432 [ 2.14293] ((9 . 1) (12 . 6) (14 . 7) (15 . 8) (17 . 11) (18 . 12) (19 . 13)) 3.759 {0/7:21} B:0 3.16678 [ 2.50023] ((12 . 4) (14 . 5) (17 . 7) (18 . 8) (20 . 12) (21 . 13)) 5.525 {0/5:15} B:0 3.16679 [ 2.50024] ((12 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (21 . 13)) 5.604 {0/4:15} B:0 3.16742 [ 2.50152] ((12 . 1) (15 . 4) (17 . 5) (18 . 6) (19 . 7) (21 . 11)) 8.886 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.6308 [and 1/min{score2}: 0.7975] -------------------------------------------------------------------------------------------------------------------------