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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 1197 1ekm_A) ( 554 1cb8_A) 0.2006 0.2036 8.6632 ( 24 49 78) 1 0.4371 0.5038 33 21
( 1197 1ekm_A) ( 1197 1ekm_A) 1.0000 1.0000 0.0000 ( 0 439 528) 0 1.0000 1.0000 33 33
( 1197 1ekm_A) ( 2084 1h54_A) 0.1364 0.1394 11.1948 ( 10 14 28) 2 0.4191 0.6240 33 21
( 1197 1ekm_A) ( 2243 1hn0_A) 0.4131 0.4512 6.9800 ( 18 85 136) 2 0.4131 0.4614 33 24
( 1197 1ekm_A) ( 2631 1ivw_A) 0.6666 0.7586 1.4074 ( 3 181 231) 0 0.6666 0.7586 33 29
( 1197 1ekm_A) ( 2689 1j0m_A) 0.4006 0.4599 6.7107 ( 16 75 120) 1 0.5131 0.9057 33 18
( 1197 1ekm_A) ( 2976 1jmm_A) 0.1515 0.2381 6.3872 ( 0 7 10) 0 0.5141 0.7999 33 21
( 1197 1ekm_A) ( 3006 1jov_A) 0.3800 0.4066 7.7147 ( 20 83 136) 1 0.4398 0.6167 33 22
( 1197 1ekm_A) ( 3102 1jz7_A) 0.4075 0.4379 7.3624 ( 21 94 153) 1 0.4950 0.6601 33 22
( 1197 1ekm_A) ( 3133 1k1x_A) 0.4038 0.4979 6.6738 ( 13 67 105) 1 0.4779 0.7823 33 18
( 1197 1ekm_A) ( 3420 1ksi_A) 0.6364 0.7241 2.1496 ( 0 159 210) 0 0.8429 0.9549 33 29
( 1197 1ekm_A) ( 3612 1lf6_A) 0.1514 0.2481 6.5370 ( 1 6 10) 0 0.4843 0.7929 33 20
( 1197 1ekm_A) ( 3741 1lur_A) 0.2121 0.3333 4.4691 ( 0 16 21) 0 0.4775 0.7024 33 21
( 1197 1ekm_A) ( 4153 1n7o_A) 0.2211 0.2315 9.4385 ( 12 28 55) 3 0.4314 0.6359 33 20
( 1197 1ekm_A) ( 4176 1n9e_A) 0.3636 0.4000 3.1830 ( 0 44 66) 0 0.7274 0.7766 33 30
( 1197 1ekm_A) ( 4380 1nsz_A) 0.2121 0.3182 4.9592 ( 0 15 21) 0 0.3594 0.4972 33 22
( 1197 1ekm_A) ( 4577 1oac_A) 0.8475 0.9018 2.2640 ( 9 292 378) 0 0.8475 0.9018 33 31
( 1197 1ekm_A) ( 5479 1qwn_A) 0.4886 0.4697 6.7754 ( 15 95 153) 2 0.4886 0.4697 33 35
( 1197 1ekm_A) ( 5711 1rwh_A) 0.1321 0.1332 9.6833 ( 12 16 45) 2 0.4883 0.6809 33 18
( 1197 1ekm_A) ( 5831 1snz_A) 0.1818 0.2400 5.2921 ( 0 10 15) 0 0.3153 0.3589 33 25
( 1197 1ekm_A) ( 6011 1ug9_A) 0.2036 0.2050 7.6719 ( 38 78 120) 1 0.4486 0.5337 33 20
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