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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 2084 1h54_A) ( 554 1cb8_A) 0.3333 0.3333 4.6497 ( 0 12 21) 0 0.6181 0.6181 21 21
( 2084 1h54_A) ( 1197 1ekm_A) 0.3192 0.2521 8.6292 ( 4 14 36) 2 0.6240 0.4191 21 33
( 2084 1h54_A) ( 2084 1h54_A) 1.0000 1.0000 0.0000 ( 0 153 210) 0 1.0000 1.0000 21 21
( 2084 1h54_A) ( 2243 1hn0_A) 0.3809 0.3333 6.2413 ( 0 19 28) 0 0.5066 0.4905 21 24
( 2084 1h54_A) ( 2631 1ivw_A) 0.2381 0.1724 6.2808 ( 0 4 10) 0 0.4584 0.3410 21 29
( 2084 1h54_A) ( 2689 1j0m_A) 0.3807 0.4438 7.5282 ( 1 18 28) 0 0.5645 0.6521 21 18
( 2084 1h54_A) ( 2976 1jmm_A) 0.2857 0.2857 8.5166 ( 0 10 15) 0 0.4977 0.4977 21 21
( 2084 1h54_A) ( 3006 1jov_A) 0.2857 0.2727 8.5958 ( 0 9 15) 0 0.5047 0.4901 21 22
( 2084 1h54_A) ( 3102 1jz7_A) 0.6654 0.6354 7.0410 ( 1 52 91) 0 0.7124 0.6803 21 22
( 2084 1h54_A) ( 3133 1k1x_A) 0.3333 0.3889 5.0348 ( 0 7 21) 0 0.4042 0.4527 21 18
( 2084 1h54_A) ( 3420 1ksi_A) 0.2166 0.2126 8.0116 ( 11 24 55) 2 0.4320 0.3699 21 29
( 2084 1h54_A) ( 3612 1lf6_A) 0.3333 0.3500 4.2075 ( 0 14 21) 0 0.5213 0.5467 21 20
( 2084 1h54_A) ( 3741 1lur_A) 0.2857 0.2857 3.0196 ( 0 9 15) 0 0.6614 0.6614 21 21
( 2084 1h54_A) ( 4153 1n7o_A) 0.3771 0.3951 7.6381 ( 2 17 28) 0 0.3818 0.3951 21 20
( 2084 1h54_A) ( 4176 1n9e_A) 0.1563 0.1560 8.4033 ( 39 61 105) 1 0.4788 0.3962 21 30
( 2084 1h54_A) ( 4380 1nsz_A) 0.2857 0.2727 4.4899 ( 0 7 15) 0 0.4586 0.4535 21 22
( 2084 1h54_A) ( 4577 1oac_A) 0.2595 0.2466 9.6339 ( 11 29 55) 3 0.5288 0.4019 21 31
( 2084 1h54_A) ( 5479 1qwn_A) 0.3807 0.2286 4.5904 ( 1 17 28) 0 0.4229 0.3416 21 35
( 2084 1h54_A) ( 5711 1rwh_A) 0.3809 0.4444 4.4385 ( 0 11 28) 0 0.4206 0.4444 21 18
( 2084 1h54_A) ( 5831 1snz_A) 0.2857 0.2400 3.5805 ( 0 9 15) 0 0.5205 0.4400 21 25
( 2084 1h54_A) ( 6011 1ug9_A) 0.3333 0.3500 5.3361 ( 0 10 21) 0 0.5236 0.5497 21 20
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