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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2084 1h54_A)  (  554 1cb8_A)     0.3333   0.3333   4.6497 (   0   12   21)   0     0.6181   0.6181   21  21
( 2084 1h54_A)  ( 1197 1ekm_A)     0.3192   0.2521   8.6292 (   4   14   36)   2     0.6240   0.4191   21  33
( 2084 1h54_A)  ( 2084 1h54_A)     1.0000   1.0000   0.0000 (   0  153  210)   0     1.0000   1.0000   21  21
( 2084 1h54_A)  ( 2243 1hn0_A)     0.3809   0.3333   6.2413 (   0   19   28)   0     0.5066   0.4905   21  24
( 2084 1h54_A)  ( 2631 1ivw_A)     0.2381   0.1724   6.2808 (   0    4   10)   0     0.4584   0.3410   21  29
( 2084 1h54_A)  ( 2689 1j0m_A)     0.3807   0.4438   7.5282 (   1   18   28)   0     0.5645   0.6521   21  18
( 2084 1h54_A)  ( 2976 1jmm_A)     0.2857   0.2857   8.5166 (   0   10   15)   0     0.4977   0.4977   21  21
( 2084 1h54_A)  ( 3006 1jov_A)     0.2857   0.2727   8.5958 (   0    9   15)   0     0.5047   0.4901   21  22
( 2084 1h54_A)  ( 3102 1jz7_A)     0.6654   0.6354   7.0410 (   1   52   91)   0     0.7124   0.6803   21  22
( 2084 1h54_A)  ( 3133 1k1x_A)     0.3333   0.3889   5.0348 (   0    7   21)   0     0.4042   0.4527   21  18
( 2084 1h54_A)  ( 3420 1ksi_A)     0.2166   0.2126   8.0116 (  11   24   55)   2     0.4320   0.3699   21  29
( 2084 1h54_A)  ( 3612 1lf6_A)     0.3333   0.3500   4.2075 (   0   14   21)   0     0.5213   0.5467   21  20
( 2084 1h54_A)  ( 3741 1lur_A)     0.2857   0.2857   3.0196 (   0    9   15)   0     0.6614   0.6614   21  21
( 2084 1h54_A)  ( 4153 1n7o_A)     0.3771   0.3951   7.6381 (   2   17   28)   0     0.3818   0.3951   21  20
( 2084 1h54_A)  ( 4176 1n9e_A)     0.1563   0.1560   8.4033 (  39   61  105)   1     0.4788   0.3962   21  30
( 2084 1h54_A)  ( 4380 1nsz_A)     0.2857   0.2727   4.4899 (   0    7   15)   0     0.4586   0.4535   21  22
( 2084 1h54_A)  ( 4577 1oac_A)     0.2595   0.2466   9.6339 (  11   29   55)   3     0.5288   0.4019   21  31
( 2084 1h54_A)  ( 5479 1qwn_A)     0.3807   0.2286   4.5904 (   1   17   28)   0     0.4229   0.3416   21  35
( 2084 1h54_A)  ( 5711 1rwh_A)     0.3809   0.4444   4.4385 (   0   11   28)   0     0.4206   0.4444   21  18
( 2084 1h54_A)  ( 5831 1snz_A)     0.2857   0.2400   3.5805 (   0    9   15)   0     0.5205   0.4400   21  25
( 2084 1h54_A)  ( 6011 1ug9_A)     0.3333   0.3500   5.3361 (   0   10   21)   0     0.5236   0.5497   21  20

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