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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2976 1jmm_A)  (  554 1cb8_A)     0.2857   0.2857   7.6791 (   0   10   15)   0     0.5398   0.5398   21  21
( 2976 1jmm_A)  ( 1197 1ekm_A)     0.2381   0.1515   6.3872 (   0    7   10)   0     0.5695   0.3789   21  33
( 2976 1jmm_A)  ( 2084 1h54_A)     0.2857   0.2857   8.5166 (   0   10   15)   0     0.4977   0.4977   21  21
( 2976 1jmm_A)  ( 2243 1hn0_A)     0.2857   0.2500   7.1947 (   0    6   15)   0     0.5236   0.4582   21  24
( 2976 1jmm_A)  ( 2631 1ivw_A)     0.1905   0.1379   6.3513 (   0    3    6)   0     0.4853   0.3893   21  29
( 2976 1jmm_A)  ( 2689 1j0m_A)     0.2857   0.3333   6.7993 (   0    5   15)   0     0.3809   0.4442   21  18
( 2976 1jmm_A)  ( 2976 1jmm_A)     1.0000   1.0000   0.0000 (   0  166  210)   0     1.0000   1.0000   21  21
( 2976 1jmm_A)  ( 3006 1jov_A)     0.2857   0.2727   4.3155 (   0    5   15)   0     0.5207   0.4975   21  22
( 2976 1jmm_A)  ( 3102 1jz7_A)     0.3333   0.3181   7.5378 (   0   15   21)   0     0.5063   0.4953   21  22
( 2976 1jmm_A)  ( 3133 1k1x_A)     0.2381   0.2777   8.8117 (   0    2   10)   0     0.3951   0.4113   21  18
( 2976 1jmm_A)  ( 3420 1ksi_A)     0.2381   0.1724   9.0194 (   0    7   10)   0     0.7966   0.5836   21  29
( 2976 1jmm_A)  ( 3612 1lf6_A)     0.2857   0.3000   6.0683 (   0    9   15)   0     0.7135   0.7490   21  20
( 2976 1jmm_A)  ( 3741 1lur_A)     0.3333   0.3333   8.1194 (   0   11   21)   0     0.5326   0.5326   21  21
( 2976 1jmm_A)  ( 4153 1n7o_A)     0.3333   0.3499   7.7149 (   0   15   21)   0     0.7495   0.7843   21  20
( 2976 1jmm_A)  ( 4176 1n9e_A)     0.1905   0.1333   5.9051 (   0    3    6)   0     0.8018   0.5653   21  30
( 2976 1jmm_A)  ( 4380 1nsz_A)     0.2857   0.2727   6.6334 (   0    9   15)   0     0.7603   0.7260   21  22
( 2976 1jmm_A)  ( 4577 1oac_A)     0.2857   0.1935   8.9818 (   0   11   15)   0     0.5702   0.3869   21  31
( 2976 1jmm_A)  ( 5479 1qwn_A)     0.2857   0.1714   7.7207 (   0    5   15)   0     0.8042   0.4853   21  35
( 2976 1jmm_A)  ( 5711 1rwh_A)     0.2857   0.3333   6.4028 (   0    9   15)   0     0.4915   0.5285   21  18
( 2976 1jmm_A)  ( 5831 1snz_A)     0.2381   0.2000   5.7071 (   0    5   10)   0     0.6389   0.5774   21  25
( 2976 1jmm_A)  ( 6011 1ug9_A)     0.2857   0.3000   7.0250 (   0   11   15)   0     0.5821   0.5912   21  20

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