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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3102 1jz7_A) ( 554 1cb8_A) 0.3636 0.3809 5.2923 ( 0 17 28) 0 0.7280 0.7546 22 21
( 3102 1jz7_A) ( 1197 1ekm_A) 0.7604 0.5135 6.4527 ( 5 79 136) 0 0.7604 0.5135 22 33
( 3102 1jz7_A) ( 2084 1h54_A) 0.3635 0.3808 8.2628 ( 0 19 28) 0 0.4326 0.4492 22 21
( 3102 1jz7_A) ( 2243 1hn0_A) 0.7612 0.7112 4.5148 ( 9 97 153) 0 0.7692 0.7169 22 24
( 3102 1jz7_A) ( 2631 1ivw_A) 0.7671 0.5848 6.1179 ( 4 80 136) 0 0.7671 0.5848 22 29
( 3102 1jz7_A) ( 2689 1j0m_A) 0.7271 0.8884 3.8037 ( 1 86 120) 0 0.7271 0.8884 22 18
( 3102 1jz7_A) ( 2976 1jmm_A) 0.3181 0.3333 7.5378 ( 0 15 21) 0 0.4953 0.5063 22 21
( 3102 1jz7_A) ( 3006 1jov_A) 0.3174 0.3174 4.7582 ( 1 10 21) 0 0.6745 0.6745 22 22
( 3102 1jz7_A) ( 3102 1jz7_A) 1.0000 1.0000 0.0000 ( 0 179 231) 0 1.0000 1.0000 22 22
( 3102 1jz7_A) ( 3133 1k1x_A) 0.7266 0.8870 5.0898 ( 2 81 120) 0 0.7266 0.8870 22 18
( 3102 1jz7_A) ( 3420 1ksi_A) 0.3109 0.3059 8.4808 ( 22 69 120) 1 0.3885 0.3769 22 29
( 3102 1jz7_A) ( 3612 1lf6_A) 0.3182 0.3500 6.1213 ( 0 12 21) 0 0.7684 0.8431 22 20
( 3102 1jz7_A) ( 3741 1lur_A) 0.2727 0.2857 3.2050 ( 0 7 15) 0 0.3966 0.4036 22 21
( 3102 1jz7_A) ( 4153 1n7o_A) 0.7723 0.8494 3.7916 ( 2 88 136) 0 0.7723 0.8494 22 20
( 3102 1jz7_A) ( 4176 1n9e_A) 0.7671 0.5655 6.5950 ( 4 83 136) 0 0.7671 0.5655 22 30
( 3102 1jz7_A) ( 4380 1nsz_A) 0.3197 0.3197 5.7945 ( 16 52 91) 0 0.6797 0.6797 22 22
( 3102 1jz7_A) ( 4577 1oac_A) 0.3755 0.3615 7.1446 ( 21 80 136) 0 0.6827 0.5281 22 31
( 3102 1jz7_A) ( 5479 1qwn_A) 0.3137 0.1996 6.7030 ( 2 13 21) 0 0.8611 0.5426 22 35
( 3102 1jz7_A) ( 5711 1rwh_A) 0.2727 0.3333 5.0646 ( 0 10 15) 0 0.6277 0.7092 22 18
( 3102 1jz7_A) ( 5831 1snz_A) 0.2718 0.2395 6.2721 ( 1 8 15) 0 0.4402 0.4248 22 25
( 3102 1jz7_A) ( 6011 1ug9_A) 0.3182 0.3500 5.8888 ( 0 12 21) 0 0.7255 0.7971 22 20
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