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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3133 1k1x_A) ( 554 1cb8_A) 0.8093 0.7212 4.9812 ( 7 76 120) 0 0.8093 0.7212 18 21
( 3133 1k1x_A) ( 1197 1ekm_A) 0.4979 0.4038 6.6738 ( 13 67 105) 1 0.5002 0.4313 18 33
( 3133 1k1x_A) ( 2084 1h54_A) 0.3889 0.3333 5.0348 ( 0 7 21) 0 0.4527 0.4042 18 21
( 3133 1k1x_A) ( 2243 1hn0_A) 0.3878 0.2914 5.3199 ( 1 12 21) 0 0.7998 0.6165 18 24
( 3133 1k1x_A) ( 2631 1ivw_A) 0.2849 0.2808 6.4996 ( 28 80 120) 1 0.5969 0.4311 18 29
( 3133 1k1x_A) ( 2689 1j0m_A) 0.8700 0.8700 4.2746 ( 5 82 120) 0 0.8700 0.8700 18 18
( 3133 1k1x_A) ( 2976 1jmm_A) 0.2777 0.2381 8.8117 ( 0 2 10) 0 0.4113 0.3951 18 21
( 3133 1k1x_A) ( 3006 1jov_A) 0.4999 0.4091 5.4789 ( 0 26 36) 0 0.7314 0.6540 18 22
( 3133 1k1x_A) ( 3102 1jz7_A) 0.8870 0.7266 5.0898 ( 2 81 120) 0 0.8870 0.7266 18 22
( 3133 1k1x_A) ( 3133 1k1x_A) 1.0000 1.0000 0.0000 ( 0 122 153) 0 1.0000 1.0000 18 18
( 3133 1k1x_A) ( 3420 1ksi_A) 0.2909 0.2564 10.7837 ( 5 15 36) 1 0.8862 0.5515 18 29
( 3133 1k1x_A) ( 3612 1lf6_A) 0.4999 0.4500 5.1194 ( 0 22 36) 0 0.5662 0.5546 18 20
( 3133 1k1x_A) ( 3741 1lur_A) 0.3734 0.3258 1.9289 ( 1 6 21) 0 0.5499 0.4735 18 21
( 3133 1k1x_A) ( 4153 1n7o_A) 0.8474 0.7745 4.1299 ( 6 79 120) 0 0.8474 0.7745 18 20
( 3133 1k1x_A) ( 4176 1n9e_A) 0.8198 0.4989 5.4777 ( 4 67 105) 0 0.8846 0.5330 18 30
( 3133 1k1x_A) ( 4380 1nsz_A) 0.4067 0.3481 3.2895 ( 2 11 28) 0 0.8256 0.6790 18 22
( 3133 1k1x_A) ( 4577 1oac_A) 0.2778 0.1613 4.7701 ( 0 4 10) 0 0.7097 0.4967 18 31
( 3133 1k1x_A) ( 5479 1qwn_A) 0.4444 0.2286 4.5811 ( 0 16 28) 0 0.6934 0.4445 18 35
( 3133 1k1x_A) ( 5711 1rwh_A) 0.8212 0.8212 5.1713 ( 7 80 120) 0 0.9224 0.9224 18 18
( 3133 1k1x_A) ( 5831 1snz_A) 0.3333 0.2400 5.8616 ( 0 7 15) 0 0.6433 0.5239 18 25
( 3133 1k1x_A) ( 6011 1ug9_A) 0.4999 0.4500 4.7924 ( 0 21 36) 0 0.5783 0.5620 18 20
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