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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3741 1lur_A) ( 554 1cb8_A) 0.3333 0.3333 5.6175 ( 0 12 21) 0 0.5061 0.5061 21 21
( 3741 1lur_A) ( 1197 1ekm_A) 0.3333 0.2121 4.4691 ( 0 16 21) 0 0.7024 0.4775 21 33
( 3741 1lur_A) ( 2084 1h54_A) 0.2857 0.2857 3.0196 ( 0 9 15) 0 0.4736 0.4736 21 21
( 3741 1lur_A) ( 2243 1hn0_A) 0.3333 0.2917 5.6194 ( 0 10 21) 0 0.4746 0.4159 21 24
( 3741 1lur_A) ( 2631 1ivw_A) 0.3333 0.2414 4.9108 ( 0 16 21) 0 0.6475 0.5014 21 29
( 3741 1lur_A) ( 2689 1j0m_A) 0.3333 0.3889 5.0552 ( 0 13 21) 0 0.6348 0.6908 21 18
( 3741 1lur_A) ( 2976 1jmm_A) 0.3333 0.3333 8.1194 ( 0 11 21) 0 0.5326 0.5326 21 21
( 3741 1lur_A) ( 3006 1jov_A) 0.7617 0.7271 3.6952 ( 0 74 120) 0 0.8076 0.7712 21 22
( 3741 1lur_A) ( 3102 1jz7_A) 0.2857 0.2727 4.4416 ( 0 6 15) 0 0.4036 0.3966 21 22
( 3741 1lur_A) ( 3133 1k1x_A) 0.3258 0.3734 1.9289 ( 1 6 21) 0 0.4735 0.5499 21 18
( 3741 1lur_A) ( 3420 1ksi_A) 0.2857 0.2069 4.8664 ( 0 11 15) 0 0.4463 0.3807 21 29
( 3741 1lur_A) ( 3612 1lf6_A) 0.3333 0.3499 7.1522 ( 0 14 21) 0 0.6658 0.6989 21 20
( 3741 1lur_A) ( 3741 1lur_A) 1.0000 1.0000 0.0000 ( 0 155 210) 0 1.0000 1.0000 21 21
( 3741 1lur_A) ( 4153 1n7o_A) 0.3333 0.3500 4.4737 ( 0 12 21) 0 0.5236 0.5498 21 20
( 3741 1lur_A) ( 4176 1n9e_A) 0.2857 0.2000 5.9212 ( 0 11 15) 0 0.5779 0.4473 21 30
( 3741 1lur_A) ( 4380 1nsz_A) 0.7618 0.7272 3.0340 ( 1 85 120) 0 0.7618 0.7272 21 22
( 3741 1lur_A) ( 4577 1oac_A) 0.2381 0.1613 5.0462 ( 0 7 10) 0 0.6652 0.5185 21 31
( 3741 1lur_A) ( 5479 1qwn_A) 0.3333 0.2000 7.4948 ( 0 14 21) 0 0.5505 0.3863 21 35
( 3741 1lur_A) ( 5711 1rwh_A) 0.2857 0.3333 4.7415 ( 0 6 15) 0 0.4870 0.5112 21 18
( 3741 1lur_A) ( 5831 1snz_A) 0.9522 0.7999 2.7732 ( 0 128 190) 0 0.9522 0.7999 21 25
( 3741 1lur_A) ( 6011 1ug9_A) 0.2857 0.3000 6.5959 ( 0 6 15) 0 0.5130 0.5192 21 20
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