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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3741 1lur_A)  (  554 1cb8_A)     0.3333   0.3333   5.6175 (   0   12   21)   0     0.5061   0.5061   21  21
( 3741 1lur_A)  ( 1197 1ekm_A)     0.3333   0.2121   4.4691 (   0   16   21)   0     0.7024   0.4775   21  33
( 3741 1lur_A)  ( 2084 1h54_A)     0.2857   0.2857   3.0196 (   0    9   15)   0     0.4736   0.4736   21  21
( 3741 1lur_A)  ( 2243 1hn0_A)     0.3333   0.2917   5.6194 (   0   10   21)   0     0.4746   0.4159   21  24
( 3741 1lur_A)  ( 2631 1ivw_A)     0.3333   0.2414   4.9108 (   0   16   21)   0     0.6475   0.5014   21  29
( 3741 1lur_A)  ( 2689 1j0m_A)     0.3333   0.3889   5.0552 (   0   13   21)   0     0.6348   0.6908   21  18
( 3741 1lur_A)  ( 2976 1jmm_A)     0.3333   0.3333   8.1194 (   0   11   21)   0     0.5326   0.5326   21  21
( 3741 1lur_A)  ( 3006 1jov_A)     0.7617   0.7271   3.6952 (   0   74  120)   0     0.8076   0.7712   21  22
( 3741 1lur_A)  ( 3102 1jz7_A)     0.2857   0.2727   4.4416 (   0    6   15)   0     0.4036   0.3966   21  22
( 3741 1lur_A)  ( 3133 1k1x_A)     0.3258   0.3734   1.9289 (   1    6   21)   0     0.4735   0.5499   21  18
( 3741 1lur_A)  ( 3420 1ksi_A)     0.2857   0.2069   4.8664 (   0   11   15)   0     0.4463   0.3807   21  29
( 3741 1lur_A)  ( 3612 1lf6_A)     0.3333   0.3499   7.1522 (   0   14   21)   0     0.6658   0.6989   21  20
( 3741 1lur_A)  ( 3741 1lur_A)     1.0000   1.0000   0.0000 (   0  155  210)   0     1.0000   1.0000   21  21
( 3741 1lur_A)  ( 4153 1n7o_A)     0.3333   0.3500   4.4737 (   0   12   21)   0     0.5236   0.5498   21  20
( 3741 1lur_A)  ( 4176 1n9e_A)     0.2857   0.2000   5.9212 (   0   11   15)   0     0.5779   0.4473   21  30
( 3741 1lur_A)  ( 4380 1nsz_A)     0.7618   0.7272   3.0340 (   1   85  120)   0     0.7618   0.7272   21  22
( 3741 1lur_A)  ( 4577 1oac_A)     0.2381   0.1613   5.0462 (   0    7   10)   0     0.6652   0.5185   21  31
( 3741 1lur_A)  ( 5479 1qwn_A)     0.3333   0.2000   7.4948 (   0   14   21)   0     0.5505   0.3863   21  35
( 3741 1lur_A)  ( 5711 1rwh_A)     0.2857   0.3333   4.7415 (   0    6   15)   0     0.4870   0.5112   21  18
( 3741 1lur_A)  ( 5831 1snz_A)     0.9522   0.7999   2.7732 (   0  128  190)   0     0.9522   0.7999   21  25
( 3741 1lur_A)  ( 6011 1ug9_A)     0.2857   0.3000   6.5959 (   0    6   15)   0     0.5130   0.5192   21  20

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