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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4380 1nsz_A)  (  554 1cb8_A)     0.2273   0.2381   4.2254 (   0    4   10)   0     0.6288   0.6537   22  21
( 4380 1nsz_A)  ( 1197 1ekm_A)     0.3182   0.2121   4.9592 (   0   15   21)   0     0.6136   0.4640   22  33
( 4380 1nsz_A)  ( 2084 1h54_A)     0.2727   0.2857   4.4899 (   0    7   15)   0     0.4535   0.4586   22  21
( 4380 1nsz_A)  ( 2243 1hn0_A)     0.6610   0.6112   4.2045 (   6   68  105)   0     0.6782   0.6333   22  24
( 4380 1nsz_A)  ( 2631 1ivw_A)     0.3181   0.2414   8.4575 (   0   16   21)   0     0.4752   0.4394   22  29
( 4380 1nsz_A)  ( 2689 1j0m_A)     0.3162   0.3836   3.9388 (   1    8   21)   0     0.5338   0.5781   22  18
( 4380 1nsz_A)  ( 2976 1jmm_A)     0.2727   0.2857   6.6334 (   0    9   15)   0     0.7260   0.7603   22  21
( 4380 1nsz_A)  ( 3006 1jov_A)     0.7272   0.7272   3.0581 (   0   79  120)   0     0.7272   0.7272   22  22
( 4380 1nsz_A)  ( 3102 1jz7_A)     0.3197   0.3197   5.7945 (  16   52   91)   0     0.6797   0.6797   22  22
( 4380 1nsz_A)  ( 3133 1k1x_A)     0.3481   0.4067   3.2895 (   2   11   28)   0     0.6790   0.8256   22  18
( 4380 1nsz_A)  ( 3420 1ksi_A)     0.3181   0.2414   7.8056 (   0   14   21)   0     0.4086   0.3412   22  29
( 4380 1nsz_A)  ( 3612 1lf6_A)     0.3636   0.3999   6.2647 (   0   21   28)   0     0.6811   0.7489   22  20
( 4380 1nsz_A)  ( 3741 1lur_A)     0.7272   0.7618   3.0340 (   1   85  120)   0     0.7272   0.7618   22  21
( 4380 1nsz_A)  ( 4153 1n7o_A)     0.2727   0.3000   4.3512 (   0    8   15)   0     0.5401   0.5540   22  20
( 4380 1nsz_A)  ( 4176 1n9e_A)     0.3181   0.2333   9.2809 (   0   15   21)   0     0.4496   0.3719   22  30
( 4380 1nsz_A)  ( 4380 1nsz_A)     1.0000   1.0000   0.0000 (   0  186  231)   0     1.0000   1.0000   22  22
( 4380 1nsz_A)  ( 4577 1oac_A)     0.3181   0.2258   8.4244 (   0   16   21)   0     0.6191   0.4704   22  31
( 4380 1nsz_A)  ( 5479 1qwn_A)     0.7264   0.4571   5.4390 (   2   76  120)   0     0.7264   0.4571   22  35
( 4380 1nsz_A)  ( 5711 1rwh_A)     0.3182   0.3888   5.9495 (   0   14   21)   0     0.5986   0.6440   22  18
( 4380 1nsz_A)  ( 5831 1snz_A)     0.9138   0.8176   2.2543 (  11  159  210)   0     0.9138   0.8176   22  25
( 4380 1nsz_A)  ( 6011 1ug9_A)     0.2727   0.3000   6.4625 (   0   10   15)   0     0.6813   0.7492   22  20

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