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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 4577 1oac_A) ( 554 1cb8_A) 0.2581 0.2624 8.4405 ( 22 58 105) 2 0.3090 0.3141 31 21
( 4577 1oac_A) ( 1197 1ekm_A) 0.9018 0.8475 2.2640 ( 9 292 378) 0 0.9018 0.8475 31 33
( 4577 1oac_A) ( 2084 1h54_A) 0.2818 0.3096 10.2607 ( 10 32 55) 2 0.4019 0.5288 31 21
( 4577 1oac_A) ( 2243 1hn0_A) 0.4165 0.4363 7.6945 ( 22 99 153) 1 0.4165 0.4924 31 24
( 4577 1oac_A) ( 2631 1ivw_A) 0.7097 0.7586 2.4148 ( 1 188 231) 0 0.7097 0.7586 31 29
( 4577 1oac_A) ( 2689 1j0m_A) 0.4206 0.4761 6.8492 ( 15 73 120) 1 0.5456 0.9055 31 18
( 4577 1oac_A) ( 2976 1jmm_A) 0.1935 0.2857 8.9818 ( 0 11 15) 0 0.3869 0.5702 31 21
( 4577 1oac_A) ( 3006 1jov_A) 0.1613 0.2273 5.7857 ( 0 6 10) 0 0.5407 0.6642 31 22
( 4577 1oac_A) ( 3102 1jz7_A) 0.5281 0.6827 6.4273 ( 9 78 136) 1 0.5281 0.6827 31 22
( 4577 1oac_A) ( 3133 1k1x_A) 0.3103 0.3231 7.5420 ( 20 65 105) 0 0.4967 0.7097 31 18
( 4577 1oac_A) ( 3420 1ksi_A) 0.7419 0.7930 1.7970 ( 3 197 253) 0 0.8034 0.8359 31 29
( 4577 1oac_A) ( 3612 1lf6_A) 0.2498 0.2527 8.0143 ( 30 76 120) 2 0.4419 0.5279 31 20
( 4577 1oac_A) ( 3741 1lur_A) 0.1935 0.2857 5.4312 ( 0 10 15) 0 0.5185 0.6652 31 21
( 4577 1oac_A) ( 4153 1n7o_A) 0.2396 0.2703 9.6448 ( 5 14 36) 3 0.4498 0.6847 31 20
( 4577 1oac_A) ( 4176 1n9e_A) 0.5161 0.5333 2.8623 ( 1 88 120) 0 0.5161 0.5333 31 30
( 4577 1oac_A) ( 4380 1nsz_A) 0.2258 0.3181 8.4244 ( 0 16 21) 0 0.3238 0.3316 31 22
( 4577 1oac_A) ( 4577 1oac_A) 1.0000 1.0000 0.0000 ( 0 369 465) 0 1.0000 1.0000 31 31
( 4577 1oac_A) ( 5479 1qwn_A) 0.2942 0.2882 8.3644 ( 19 58 105) 4 0.3601 0.3479 31 35
( 4577 1oac_A) ( 5711 1rwh_A) 0.1932 0.1992 8.7497 ( 9 18 45) 2 0.4756 0.6031 31 18
( 4577 1oac_A) ( 5831 1snz_A) 0.2015 0.2022 8.1319 ( 37 75 120) 1 0.3191 0.3262 31 25
( 4577 1oac_A) ( 6011 1ug9_A) 0.1694 0.1697 7.3668 ( 53 90 136) 1 0.3791 0.4634 31 20
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