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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5479 1qwn_A) ( 554 1cb8_A) 0.2285 0.3796 3.2620 ( 1 11 28) 0 0.4893 0.6687 35 21
( 5479 1qwn_A) ( 1197 1ekm_A) 0.2549 0.2580 7.6938 ( 14 38 78) 2 0.3964 0.4004 35 33
( 5479 1qwn_A) ( 2084 1h54_A) 0.2286 0.3807 4.5904 ( 1 17 28) 0 0.3416 0.3807 35 21
( 5479 1qwn_A) ( 2243 1hn0_A) 0.2801 0.2842 7.1265 ( 41 117 171) 1 0.3903 0.4206 35 24
( 5479 1qwn_A) ( 2631 1ivw_A) 0.4435 0.4743 7.1410 ( 21 108 171) 3 0.4435 0.4743 35 29
( 5479 1qwn_A) ( 2689 1j0m_A) 0.2571 0.5000 3.5275 ( 0 20 36) 0 0.3706 0.5000 35 18
( 5479 1qwn_A) ( 2976 1jmm_A) 0.1714 0.2857 7.7207 ( 0 5 15) 0 0.4853 0.8042 35 21
( 5479 1qwn_A) ( 3006 1jov_A) 0.1685 0.1716 8.3011 ( 18 31 55) 1 0.4009 0.5241 35 22
( 5479 1qwn_A) ( 3102 1jz7_A) 0.1996 0.3137 6.7030 ( 2 13 21) 0 0.5426 0.8611 35 22
( 5479 1qwn_A) ( 3133 1k1x_A) 0.2286 0.4444 4.5211 ( 0 15 28) 0 0.4079 0.6523 35 18
( 5479 1qwn_A) ( 3420 1ksi_A) 0.2571 0.2588 7.9897 ( 43 112 171) 3 0.3120 0.3248 35 29
( 5479 1qwn_A) ( 3612 1lf6_A) 0.2571 0.4500 4.1898 ( 0 23 36) 0 0.4857 0.8495 35 20
( 5479 1qwn_A) ( 3741 1lur_A) 0.4285 0.7134 5.3228 ( 2 70 105) 0 0.4285 0.7134 35 21
( 5479 1qwn_A) ( 4153 1n7o_A) 0.2857 0.5000 4.4914 ( 0 29 45) 0 0.3841 0.5000 35 20
( 5479 1qwn_A) ( 4176 1n9e_A) 0.2125 0.2130 8.9967 ( 59 126 190) 4 0.3428 0.3533 35 30
( 5479 1qwn_A) ( 4380 1nsz_A) 0.4285 0.6815 4.9921 ( 1 66 105) 0 0.4285 0.6815 35 22
( 5479 1qwn_A) ( 4577 1oac_A) 0.2867 0.2894 7.7972 ( 34 100 153) 4 0.2882 0.2942 35 31
( 5479 1qwn_A) ( 5479 1qwn_A) 1.0000 1.0000 0.0000 ( 0 496 595) 0 1.0000 1.0000 35 35
( 5479 1qwn_A) ( 5711 1rwh_A) 0.2857 0.5554 4.9739 ( 0 23 45) 0 0.3915 0.5554 35 18
( 5479 1qwn_A) ( 5831 1snz_A) 0.3932 0.4327 6.3620 ( 19 86 136) 1 0.4711 0.5984 35 25
( 5479 1qwn_A) ( 6011 1ug9_A) 0.2571 0.4500 4.2925 ( 0 24 36) 0 0.4857 0.8492 35 20
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