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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 554 1cb8_A) ( 554 1cb8_A) 1.0000 1.0000 0.0000 ( 0 163 210) 0 1.0000 1.0000 21 21
( 554 1cb8_A) ( 1197 1ekm_A) 0.4731 0.4210 6.8893 ( 17 83 136) 2 0.5038 0.4371 21 33
( 554 1cb8_A) ( 2084 1h54_A) 0.3809 0.3809 4.9966 ( 0 15 28) 0 0.6181 0.6181 21 21
( 554 1cb8_A) ( 2243 1hn0_A) 0.9931 0.8714 3.9494 ( 6 152 210) 0 0.9931 0.8714 21 24
( 554 1cb8_A) ( 2631 1ivw_A) 0.2795 0.2762 6.6851 ( 26 73 120) 1 0.4305 0.3692 21 29
( 554 1cb8_A) ( 2689 1j0m_A) 0.8569 0.9995 3.3826 ( 1 104 153) 0 0.8569 0.9995 21 18
( 554 1cb8_A) ( 2976 1jmm_A) 0.2857 0.2857 7.6791 ( 0 10 15) 0 0.5398 0.5398 21 21
( 554 1cb8_A) ( 3006 1jov_A) 0.7973 0.7629 4.8553 ( 5 82 136) 0 0.7973 0.7629 21 22
( 554 1cb8_A) ( 3102 1jz7_A) 0.3809 0.3636 5.2923 ( 0 17 28) 0 0.7546 0.7280 21 22
( 554 1cb8_A) ( 3133 1k1x_A) 0.7212 0.8093 4.9812 ( 7 76 120) 0 0.7212 0.8093 21 18
( 554 1cb8_A) ( 3420 1ksi_A) 0.2426 0.2406 9.1688 ( 23 56 105) 2 0.5166 0.3930 21 29
( 554 1cb8_A) ( 3612 1lf6_A) 0.4285 0.4500 4.5008 ( 0 22 36) 0 0.6135 0.6429 21 20
( 554 1cb8_A) ( 3741 1lur_A) 0.3333 0.3333 5.6175 ( 0 12 21) 0 0.5061 0.5061 21 21
( 554 1cb8_A) ( 4153 1n7o_A) 0.9042 0.9493 3.6115 ( 2 117 171) 0 0.9042 0.9493 21 20
( 554 1cb8_A) ( 4176 1n9e_A) 0.2857 0.2000 8.4657 ( 0 6 15) 0 0.5326 0.4142 21 30
( 554 1cb8_A) ( 4380 1nsz_A) 0.2857 0.2727 8.1679 ( 0 10 15) 0 0.6537 0.6288 21 22
( 554 1cb8_A) ( 4577 1oac_A) 0.3587 0.3490 7.3803 ( 26 94 153) 2 0.4196 0.3896 21 31
( 554 1cb8_A) ( 5479 1qwn_A) 0.1428 0.1427 6.8345 ( 77 110 171) 1 0.6687 0.4893 21 35
( 554 1cb8_A) ( 5711 1rwh_A) 0.8571 0.9998 2.4753 ( 1 108 153) 0 0.8571 0.9998 21 18
( 554 1cb8_A) ( 5831 1snz_A) 0.7074 0.5971 4.8701 ( 4 65 105) 0 0.7074 0.5971 21 25
( 554 1cb8_A) ( 6011 1ug9_A) 0.3809 0.4000 4.5330 ( 0 17 28) 0 0.6858 0.7074 21 20
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