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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  554 1cb8_A)  (  554 1cb8_A)     1.0000   1.0000   0.0000 (   0  163  210)   0     1.0000   1.0000   21  21
(  554 1cb8_A)  ( 1197 1ekm_A)     0.4731   0.4210   6.8893 (  17   83  136)   2     0.5038   0.4371   21  33
(  554 1cb8_A)  ( 2084 1h54_A)     0.3809   0.3809   4.9966 (   0   15   28)   0     0.6181   0.6181   21  21
(  554 1cb8_A)  ( 2243 1hn0_A)     0.9931   0.8714   3.9494 (   6  152  210)   0     0.9931   0.8714   21  24
(  554 1cb8_A)  ( 2631 1ivw_A)     0.2795   0.2762   6.6851 (  26   73  120)   1     0.4305   0.3692   21  29
(  554 1cb8_A)  ( 2689 1j0m_A)     0.8569   0.9995   3.3826 (   1  104  153)   0     0.8569   0.9995   21  18
(  554 1cb8_A)  ( 2976 1jmm_A)     0.2857   0.2857   7.6791 (   0   10   15)   0     0.5398   0.5398   21  21
(  554 1cb8_A)  ( 3006 1jov_A)     0.7973   0.7629   4.8553 (   5   82  136)   0     0.7973   0.7629   21  22
(  554 1cb8_A)  ( 3102 1jz7_A)     0.3809   0.3636   5.2923 (   0   17   28)   0     0.7546   0.7280   21  22
(  554 1cb8_A)  ( 3133 1k1x_A)     0.7212   0.8093   4.9812 (   7   76  120)   0     0.7212   0.8093   21  18
(  554 1cb8_A)  ( 3420 1ksi_A)     0.2426   0.2406   9.1688 (  23   56  105)   2     0.5166   0.3930   21  29
(  554 1cb8_A)  ( 3612 1lf6_A)     0.4285   0.4500   4.5008 (   0   22   36)   0     0.6135   0.6429   21  20
(  554 1cb8_A)  ( 3741 1lur_A)     0.3333   0.3333   5.6175 (   0   12   21)   0     0.5061   0.5061   21  21
(  554 1cb8_A)  ( 4153 1n7o_A)     0.9042   0.9493   3.6115 (   2  117  171)   0     0.9042   0.9493   21  20
(  554 1cb8_A)  ( 4176 1n9e_A)     0.2857   0.2000   8.4657 (   0    6   15)   0     0.5326   0.4142   21  30
(  554 1cb8_A)  ( 4380 1nsz_A)     0.2857   0.2727   8.1679 (   0   10   15)   0     0.6537   0.6288   21  22
(  554 1cb8_A)  ( 4577 1oac_A)     0.3587   0.3490   7.3803 (  26   94  153)   2     0.4196   0.3896   21  31
(  554 1cb8_A)  ( 5479 1qwn_A)     0.1428   0.1427   6.8345 (  77  110  171)   1     0.6687   0.4893   21  35
(  554 1cb8_A)  ( 5711 1rwh_A)     0.8571   0.9998   2.4753 (   1  108  153)   0     0.8571   0.9998   21  18
(  554 1cb8_A)  ( 5831 1snz_A)     0.7074   0.5971   4.8701 (   4   65  105)   0     0.7074   0.5971   21  25
(  554 1cb8_A)  ( 6011 1ug9_A)     0.3809   0.4000   4.5330 (   0   17   28)   0     0.6858   0.7074   21  20

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