------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [5711, 554]: Comparing 1rwh_A and 1cb8_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 57 (22 H + 35 S) secondary structure elements in 1cb8_A, of which 21 satisfy the size requirements. 1.00016 [ 1.16677] ((25 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 29) (32 . 30) (33 . 31) (35 . 32) (36 . 33) (37 . 34) (38 . 35) (39 . 36) (42 . 39) (43 . 40) (44 . 42) (46 . 43) (47 . 44) (48 . 45)) 2.475 {1/108:153} B:0 1.54131 [ 1.59649] ((25 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 29) (32 . 30) (33 . 31) (35 . 32) (36 . 33) (37 . 34) (38 . 35) (39 . 37) (42 . 39) (43 . 40) (44 . 42) (46 . 43) (47 . 44) (48 . 45)) 2.818 {16/109:153} B:0 2.00072 [ 2.33379] ((25 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 29) (32 . 30) (33 . 31) (39 . 38) (48 . 45)) 4.115 {1/27:36} B:0 2.25018 [ 2.62511] ((25 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 29) (39 . 38) (42 . 41) (48 . 45)) 4.812 {0/20:28} B:0 3.60005 [ 4.20003] ((28 . 23) (35 . 30) (36 . 31) (37 . 32) (44 . 39)) 5.012 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.8571] [5711, 1197]: Comparing 1rwh_A and 1ekm_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 55 (19 H + 36 S) secondary structure elements in 1ekm_A, of which 33 satisfy the size requirements. 2.71371 [ 3.21141] ((25 . 18) (27 . 19) (28 . 20) (29 . 22) (31 . 34) (33 . 28) (35 . 30) (36 . 33) (37 . 35) (44 . 49) (46 . 51) (47 . 53)) 8.302 {9/34:66} B:1 3.55476 [ 4.24405] ((25 . 19) (27 . 20) (28 . 30) (29 . 21) (31 . 40) (35 . 45) (38 . 35) (44 . 51) (46 . 53)) 9.062 {9/26:36} B:2 3.64329 [ 3.70843] ((25 . 19) (27 . 20) (28 . 21) (29 . 23) (31 . 24) (32 . 30) (33 . 33) (35 . 34) (36 . 35) (37 . 39) (38 . 49) (39 . 40) (42 . 45) (43 . 46) (44 . 42) (46 . 51) (47 . 53)) 8.511 {32/88:136} B:2 1.46862 [ 2.04806] ((25 . 20) (27 . 22) (28 . 23) (29 . 21) (31 . 24) (32 . 30) (33 . 33) (35 . 34) (36 . 35) (37 . 39) (38 . 49) (39 . 40) (42 . 45) (43 . 46) (44 . 42) (46 . 51) (47 . 53)) 8.766 {12/89:136} B:3 2.60351 [ 2.77016] ((25 . 20) (27 . 22) (28 . 21) (29 . 23) (31 . 24) (32 . 30) (33 . 33) (35 . 34) (36 . 35) (37 . 39) (38 . 49) (39 . 40) (42 . 45) (43 . 46) (44 . 42) (46 . 51) (47 . 53)) 8.674 {23/89:136} B:3 SIMILARITY (1/min{score1}): 0.6809 [and 1/min{score2}: 0.4883] [5711, 2084]: Comparing 1rwh_A and 1h54_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 58 (24 H + 34 S) secondary structure elements in 1h54_A, of which 21 satisfy the size requirements. 2.25013 [ 2.62508] ((31 . 8) (32 . 11) (33 . 12) (35 . 13) (36 . 14) (37 . 15) (42 . 18) (47 . 23)) 4.438 {0/11:28} B:0 2.25579 [ 2.62865] ((31 . 8) (32 . 11) (33 . 12) (35 . 13) (36 . 14) (37 . 15) (38 . 16) (43 . 19)) 4.112 {1/14:28} B:0 2.57158 [ 3.00009] ((28 . 4) (32 . 11) (33 . 12) (35 . 13) (36 . 14) (42 . 18) (47 . 23)) 5.068 {0/10:21} B:0 3.60003 [ 4.20002] ((28 . 4) (36 . 14) (39 . 17) (42 . 18) (43 . 19)) 4.237 {0/7:10} B:0 3.60004 [ 4.20003] ((25 . 1) (33 . 12) (35 . 13) (36 . 14) (47 . 23)) 4.743 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.4838 [and 1/min{score2}: 0.4379] [5711, 2243]: Comparing 1rwh_A and 1hn0_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 80 (28 H + 52 S) secondary structure elements in 1hn0_A, of which 24 satisfy the size requirements. 1.00533 [ 1.33560] ((25 . 42) (27 . 44) (28 . 45) (29 . 47) (31 . 49) (32 . 51) (33 . 52) (35 . 53) (36 . 54) (37 . 55) (38 . 56) (39 . 57) (42 . 60) (43 . 61) (44 . 63) (46 . 65) (47 . 67) (48 . 68)) 4.028 {4/110:153} B:0 2.25010 [ 3.00004] ((29 . 47) (31 . 49) (35 . 53) (36 . 54) (42 . 60) (43 . 61) (44 . 63) (48 . 68)) 4.140 {0/21:28} B:0 2.54565 [ 2.58584] ((25 . 42) (27 . 44) (28 . 45) (29 . 47) (31 . 49) (32 . 51) (33 . 52) (35 . 53) (36 . 54) (37 . 55) (38 . 56) (39 . 60) (42 . 61) (44 . 62) (46 . 65) (47 . 67) (48 . 68)) 4.113 {24/95:136} B:0 2.61014 [ 3.44515] ((28 . 47) (32 . 52) (33 . 53) (35 . 54) (38 . 57) (43 . 62) (44 . 64)) 11.327 {2/16:21} B:0 3.60005 [ 4.80002] ((25 . 45) (32 . 53) (33 . 54) (35 . 55) (42 . 63)) 4.853 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.9947 [and 1/min{score2}: 0.7487] [5711, 2631]: Comparing 1rwh_A and 1ivw_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 51 (14 H + 37 S) secondary structure elements in 1ivw_A, of which 29 satisfy the size requirements. 3.00081 [ 4.83353] ((25 . 19) (27 . 20) (28 . 21) (38 . 33) (43 . 37) (44 . 38)) 8.690 {0/10:15} B:0 3.01528 [ 4.83701] ((25 . 20) (27 . 21) (28 . 22) (33 . 31) (44 . 39) (47 . 43)) 9.763 {1/9:15} B:0 3.60026 [ 5.80006] ((32 . 32) (33 . 33) (37 . 37) (39 . 38) (42 . 39)) 7.522 {0/7:10} B:0 3.60063 [ 5.80015] ((32 . 33) (36 . 37) (38 . 38) (39 . 39) (43 . 43)) 9.354 {0/6:10} B:0 3.60100 [ 5.80024] ((25 . 18) (27 . 19) (36 . 31) (38 . 32) (44 . 37)) 10.521 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.5491 [and 1/min{score2}: 0.4841] [5711, 2689]: Comparing 1rwh_A and 1j0m_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 58 (23 H + 35 S) secondary structure elements in 1j0m_A, of which 18 satisfy the size requirements. 1.20009 [ 1.20009] ((25 . 25) (27 . 27) (28 . 28) (29 . 29) (31 . 31) (32 . 32) (33 . 33) (35 . 34) (36 . 35) (42 . 40) (43 . 41) (44 . 42) (46 . 44) (47 . 45) (48 . 46)) 2.133 {1/75:105} B:0 3.60002 [ 3.60002] ((27 . 27) (29 . 29) (38 . 36) (39 . 37) (48 . 46)) 3.760 {0/6:10} B:0 3.68294 [ 3.68294] ((25 . 28) (32 . 34) (33 . 35) (35 . 36) (48 . 46)) 6.132 {1/5:10} B:0 3.79376 [ 3.79376] ((33 . 27) (35 . 28) (36 . 29) (46 . 33) (47 . 35)) 9.494 {1/4:10} B:0 4.50004 [ 4.50004] ((35 . 32) (36 . 33) (37 . 34) (46 . 41)) 5.415 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.8333] [5711, 2976]: Comparing 1rwh_A and 1jmm_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 32 (10 H + 22 S) secondary structure elements in 1jmm_A, of which 21 satisfy the size requirements. 3.00024 [ 3.50015] ((32 . 15) (33 . 17) (35 . 18) (36 . 20) (44 . 25) (46 . 26)) 6.403 {0/9:15} B:0 3.00053 [ 3.50033] ((31 . 15) (33 . 18) (35 . 20) (38 . 22) (46 . 28) (47 . 29)) 7.817 {0/9:15} B:0 3.60016 [ 4.20010] ((32 . 15) (33 . 17) (35 . 18) (36 . 20) (42 . 23)) 6.637 {0/4:10} B:0 3.60021 [ 4.20013] ((28 . 14) (29 . 15) (39 . 26) (44 . 28) (47 . 32)) 7.096 {0/6:10} B:0 3.60021 [ 4.20013] ((31 . 15) (33 . 18) (35 . 20) (36 . 21) (42 . 24)) 7.132 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5285 [and 1/min{score2}: 0.4915] [5711, 3006]: Comparing 1rwh_A and 1jov_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 26 (4 H + 22 S) secondary structure elements in 1jov_A, of which 22 satisfy the size requirements. 1.14374 [ 1.38541] ((25 . 2) (27 . 3) (28 . 4) (29 . 5) (32 . 9) (33 . 10) (35 . 11) (36 . 12) (37 . 13) (38 . 14) (39 . 16) (42 . 20) (43 . 21) (44 . 22) (46 . 24) (47 . 26)) 4.889 {4/71:120} B:0 2.57155 [ 3.14292] ((25 . 2) (27 . 3) (28 . 4) (42 . 20) (43 . 21) (46 . 24) (47 . 26)) 4.823 {0/13:21} B:0 2.57163 [ 3.14297] ((25 . 2) (27 . 3) (28 . 4) (42 . 20) (43 . 21) (44 . 22) (46 . 24)) 5.451 {0/13:21} B:0 2.57230 [ 3.14333] ((32 . 10) (33 . 11) (35 . 12) (36 . 13) (38 . 16) (39 . 17) (42 . 19)) 7.886 {0/15:21} B:0 3.06923 [ 3.70530] ((27 . 1) (32 . 2) (33 . 3) (35 . 4) (36 . 5) (47 . 10)) 6.255 {1/6:15} B:0 SIMILARITY (1/min{score1}): 0.8743 [and 1/min{score2}: 0.7218] [5711, 3102]: Comparing 1rwh_A and 1jz7_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 82 (21 H + 61 S) secondary structure elements in 1jz7_A, of which 22 satisfy the size requirements. 1.20220 [ 1.46787] ((25 . 57) (27 . 58) (28 . 59) (29 . 60) (32 . 66) (33 . 67) (35 . 68) (36 . 69) (38 . 70) (39 . 71) (42 . 75) (43 . 76) (44 . 77) (46 . 80) (47 . 82)) 4.920 {2/71:105} B:0 3.00022 [ 3.66679] ((27 . 60) (31 . 67) (42 . 75) (43 . 76) (46 . 80) (47 . 82)) 6.288 {0/10:15} B:0 3.00030 [ 3.66683] ((25 . 57) (27 . 58) (28 . 59) (36 . 69) (39 . 71) (44 . 75)) 6.765 {0/10:15} B:0 3.60004 [ 4.40002] ((33 . 69) (42 . 75) (43 . 76) (46 . 80) (47 . 82)) 4.589 {0/5:10} B:0 3.60010 [ 4.40005] ((32 . 68) (42 . 75) (43 . 76) (46 . 80) (47 . 82)) 5.866 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.8318 [and 1/min{score2}: 0.6813] [5711, 3133]: Comparing 1rwh_A and 1k1x_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 53 (27 H + 26 S) secondary structure elements in 1k1x_A, of which 18 satisfy the size requirements. 1.21773 [ 1.21773] ((25 . 35) (27 . 36) (28 . 37) (29 . 38) (31 . 41) (32 . 43) (33 . 44) (35 . 45) (36 . 46) (37 . 47) (39 . 48) (42 . 49) (43 . 50) (44 . 51) (46 . 52) (47 . 53)) 5.171 {7/80:120} B:0 1.80886 [ 1.80886] ((27 . 36) (28 . 37) (32 . 43) (33 . 44) (35 . 45) (36 . 46) (39 . 48) (44 . 51) (46 . 52) (47 . 53)) 5.154 {2/30:45} B:0 3.03803 [ 3.03803] ((32 . 35) (33 . 36) (35 . 37) (36 . 38) (42 . 41) (47 . 46)) 6.092 {1/7:15} B:0 3.60019 [ 3.60019] ((32 . 44) (33 . 45) (35 . 46) (36 . 47) (38 . 48)) 6.922 {0/5:10} B:0 3.60021 [ 3.60021] ((29 . 38) (36 . 44) (37 . 45) (46 . 52) (47 . 53)) 7.159 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.9224 [and 1/min{score2}: 0.9224] [5711, 3420]: Comparing 1rwh_A and 1ksi_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 51 (14 H + 37 S) secondary structure elements in 1ksi_A, of which 29 satisfy the size requirements. 3.95458 [ 4.44852] ((28 . 21) (31 . 23) (32 . 24) (33 . 32) (35 . 33) (36 . 51) (43 . 29) (47 . 31)) 9.231 {5/13:28} B:1 4.36509 [ 4.75241] ((25 . 21) (27 . 22) (28 . 23) (29 . 51) (33 . 32) (35 . 33) (37 . 42) (38 . 44)) 8.127 {3/7:28} B:1 4.35913 [ 4.42143] ((25 . 20) (27 . 21) (28 . 22) (29 . 23) (32 . 27) (33 . 24) (35 . 32) (36 . 33) (38 . 44) (43 . 51) (44 . 40) (46 . 42) (47 . 50)) 7.794 {20/46:78} B:2 4.79113 [ 4.83837] ((25 . 19) (27 . 20) (28 . 21) (29 . 22) (33 . 27) (35 . 29) (36 . 32) (37 . 33) (38 . 44) (42 . 50) (44 . 46) (46 . 48) (47 . 31)) 8.048 {22/46:78} B:2 6.37076 [ 6.41017] ((27 . 19) (28 . 27) (29 . 29) (31 . 30) (33 . 20) (35 . 21) (36 . 22) (38 . 31) (39 . 33) (42 . 32) (47 . 51)) 10.572 {14/22:55} B:2 SIMILARITY (1/min{score1}): 0.4447 [and 1/min{score2}: 0.3946] [5711, 3612]: Comparing 1rwh_A and 1lf6_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 45 (22 H + 23 S) secondary structure elements in 1lf6_A, of which 20 satisfy the size requirements. 1.80084 [ 2.00061] ((32 . 7) (33 . 8) (35 . 9) (36 . 10) (39 . 13) (42 . 14) (43 . 15) (46 . 19) (47 . 20) (48 . 21)) 4.678 {1/30:45} B:0 3.60012 [ 4.00009] ((33 . 2) (35 . 3) (36 . 4) (37 . 5) (46 . 12)) 6.179 {0/2:10} B:0 3.60012 [ 4.00009] ((33 . 2) (35 . 3) (36 . 4) (38 . 5) (46 . 12)) 6.215 {0/4:10} B:0 3.60019 [ 4.00014] ((39 . 3) (42 . 4) (43 . 5) (44 . 7) (46 . 8)) 6.941 {0/5:10} B:0 3.60021 [ 4.00016] ((32 . 2) (33 . 3) (35 . 4) (36 . 5) (46 . 13)) 7.155 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7339 [and 1/min{score2}: 0.6895] [5711, 3741]: Comparing 1rwh_A and 1lur_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 35 (6 H + 29 S) secondary structure elements in 1lur_A, of which 21 satisfy the size requirements. 3.00007 [ 3.50004] ((28 . 2) (32 . 13) (33 . 14) (35 . 16) (36 . 17) (46 . 25)) 4.742 {0/6:15} B:0 3.00008 [ 3.50005] ((25 . 13) (27 . 14) (28 . 16) (29 . 17) (37 . 27) (42 . 32)) 4.846 {0/8:15} B:0 3.00162 [ 3.50102] ((25 . 1) (27 . 2) (28 . 3) (33 . 13) (44 . 25) (46 . 26)) 10.357 {0/10:15} B:0 3.00674 [ 3.50425] ((32 . 14) (33 . 16) (35 . 17) (38 . 21) (39 . 22) (46 . 26)) 7.479 {1/11:15} B:0 3.60008 [ 4.20005] ((42 . 26) (43 . 27) (44 . 28) (46 . 32) (47 . 35)) 5.634 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.5112 [and 1/min{score2}: 0.4870] [5711, 4153]: Comparing 1rwh_A and 1n7o_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 59 (26 H + 33 S) secondary structure elements in 1n7o_A, of which 20 satisfy the size requirements. 1.28591 [ 1.42871] ((27 . 30) (28 . 31) (29 . 32) (31 . 34) (32 . 35) (33 . 36) (35 . 37) (36 . 38) (42 . 43) (43 . 45) (44 . 46) (46 . 48) (47 . 49) (48 . 50)) 2.788 {1/61:91} B:0 2.57148 [ 2.85718] ((29 . 32) (31 . 34) (35 . 37) (36 . 38) (38 . 39) (39 . 40) (48 . 50)) 3.879 {0/15:21} B:0 3.60072 [ 4.00052] ((35 . 34) (37 . 36) (43 . 39) (44 . 40) (46 . 43)) 9.686 {0/7:10} B:0 3.60078 [ 4.00057] ((28 . 28) (33 . 34) (35 . 35) (36 . 36) (37 . 37)) 9.869 {0/1:10} B:0 3.60163 [ 4.00119] ((31 . 37) (33 . 39) (38 . 45) (39 . 46) (42 . 48)) 11.887 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.6999] [5711, 4176]: Comparing 1rwh_A and 1n9e_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 61 (19 H + 42 S) secondary structure elements in 1n9e_A, of which 30 satisfy the size requirements. 3.60001 [ 6.00000] ((25 . 27) (27 . 28) (33 . 39) (35 . 40) (36 . 41)) 3.129 {0/1:10} B:0 3.79324 [ 6.04472] ((25 . 25) (27 . 26) (28 . 27) (36 . 39) (37 . 40)) 4.956 {1/4:10} B:0 4.06013 [ 4.09973] ((25 . 26) (27 . 27) (28 . 28) (29 . 29) (31 . 30) (32 . 36) (33 . 39) (35 . 40) (36 . 41) (37 . 46) (38 . 53) (39 . 47) (42 . 50) (43 . 51) (46 . 55) (47 . 57)) 6.153 {30/74:120} B:1 3.31074 [ 5.07651] ((38 . 50) (39 . 46) (42 . 53) (43 . 55) (44 . 57) (46 . 51)) 8.554 {1/4:15} B:2 3.34736 [ 3.43656] ((25 . 26) (27 . 27) (28 . 29) (29 . 28) (31 . 30) (32 . 36) (33 . 39) (35 . 40) (36 . 41) (37 . 46) (38 . 53) (42 . 50) (43 . 51) (46 . 55) (47 . 57)) 5.885 {19/57:105} B:2 SIMILARITY (1/min{score1}): 0.5770 [and 1/min{score2}: 0.3637] [5711, 4380]: Comparing 1rwh_A and 1nsz_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 39 (8 H + 31 S) secondary structure elements in 1nsz_A, of which 22 satisfy the size requirements. 2.57171 [ 3.14301] ((25 . 14) (27 . 15) (28 . 17) (29 . 18) (38 . 31) (39 . 32) (42 . 36)) 5.950 {0/14:21} B:0 2.57531 [ 3.14498] ((25 . 2) (27 . 3) (28 . 4) (32 . 15) (44 . 29) (46 . 30) (47 . 31)) 11.474 {0/13:21} B:0 3.79321 [ 4.51043] ((25 . 1) (27 . 2) (28 . 3) (29 . 4) (36 . 17)) 4.073 {1/4:10} B:0 4.50003 [ 5.50001] ((25 . 30) (27 . 31) (28 . 32) (29 . 36)) 4.956 {0/0:6} B:0 4.50003 [ 5.50002] ((33 . 14) (35 . 15) (36 . 17) (37 . 18)) 5.252 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6440 [and 1/min{score2}: 0.5986] [5711, 4577]: Comparing 1rwh_A and 1oac_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 63 (15 H + 48 S) secondary structure elements in 1oac_A, of which 31 satisfy the size requirements. 5.02104 [ 5.17543] ((25 . 31) (27 . 34) (28 . 48) (29 . 58) (32 . 42) (33 . 43) (35 . 62) (37 . 50) (43 . 52) (47 . 54)) 8.750 {9/18:45} B:2 2.89055 [ 3.34850] ((25 . 50) (27 . 49) (36 . 52) (37 . 58) (38 . 60) (39 . 42) (42 . 43) (43 . 62) (44 . 34) (46 . 48) (47 . 54)) 8.233 {9/32:55} B:3 3.03959 [ 3.59600] ((27 . 33) (28 . 52) (29 . 54) (31 . 55) (32 . 58) (33 . 60) (35 . 48) (36 . 43) (37 . 62) (47 . 42)) 6.780 {5/17:45} B:3 3.95829 [ 4.16663] ((25 . 31) (27 . 34) (28 . 60) (29 . 58) (32 . 42) (33 . 55) (35 . 62) (37 . 49) (42 . 50) (43 . 52) (47 . 54)) 9.434 {11/28:55} B:3 4.12154 [ 4.25579] ((25 . 29) (27 . 30) (28 . 31) (29 . 42) (31 . 49) (32 . 32) (35 . 62) (38 . 43) (43 . 58) (44 . 60) (46 . 55) (48 . 59)) 10.900 {16/39:66} B:3 SIMILARITY (1/min{score1}): 0.6031 [and 1/min{score2}: 0.4756] [5711, 5479]: Comparing 1rwh_A and 1qwn_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 74 (25 H + 49 S) secondary structure elements in 1qwn_A, of which 35 satisfy the size requirements. 1.80040 [ 3.50005] ((31 . 48) (32 . 50) (33 . 51) (35 . 52) (36 . 53) (37 . 54) (42 . 59) (43 . 60) (47 . 63) (48 . 65)) 4.974 {0/23:45} B:0 2.00038 [ 3.88894] ((31 . 48) (32 . 50) (33 . 51) (35 . 52) (36 . 53) (37 . 54) (39 . 55) (47 . 63) (48 . 65)) 5.317 {0/18:36} B:0 2.57146 [ 5.00000] ((29 . 47) (32 . 50) (33 . 51) (42 . 59) (43 . 60) (47 . 63) (48 . 65)) 3.497 {0/12:21} B:0 3.60012 [ 7.00002] ((31 . 48) (36 . 53) (39 . 55) (42 . 56) (47 . 63)) 6.250 {0/8:10} B:0 3.60021 [ 7.00003] ((32 . 51) (33 . 52) (35 . 53) (36 . 54) (38 . 55)) 7.155 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5554 [and 1/min{score2}: 0.2933] [5711, 5711]: Comparing 1rwh_A and 1rwh_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. 1.00000 [ 1.00000] ((25 . 25) (27 . 27) (28 . 28) (29 . 29) (31 . 31) (32 . 32) (33 . 33) (35 . 35) (36 . 36) (37 . 37) (38 . 38) (39 . 39) (42 . 42) (43 . 43) (44 . 44) (46 . 46) (47 . 47) (48 . 48)) 0.000 {0/115:153} B:0 3.60005 [ 3.60005] ((28 . 25) (35 . 32) (36 . 33) (37 . 35) (44 . 42)) 5.070 {0/4:10} B:0 3.60005 [ 3.60005] ((25 . 28) (32 . 35) (33 . 36) (35 . 37) (42 . 44)) 5.070 {0/4:10} B:0 3.60033 [ 3.60033] ((28 . 25) (33 . 27) (35 . 28) (36 . 29) (37 . 36)) 7.964 {0/0:10} B:0 3.60033 [ 3.60033] ((25 . 28) (27 . 33) (28 . 35) (29 . 36) (36 . 37)) 7.964 {0/0:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [5711, 5831]: Comparing 1rwh_A and 1snz_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 36 (7 H + 29 S) secondary structure elements in 1snz_A, of which 25 satisfy the size requirements. 3.00004 [ 4.16668] ((25 . 14) (27 . 15) (28 . 17) (29 . 18) (37 . 28) (42 . 33)) 4.127 {0/7:15} B:0 3.00007 [ 4.16669] ((28 . 3) (32 . 14) (33 . 15) (35 . 17) (36 . 18) (46 . 26)) 4.633 {0/7:15} B:0 3.00083 [ 4.16698] ((25 . 2) (27 . 3) (28 . 4) (44 . 26) (46 . 27) (47 . 28)) 8.758 {0/10:15} B:0 3.00168 [ 4.16730] ((25 . 2) (27 . 3) (28 . 4) (32 . 15) (44 . 26) (46 . 27)) 10.449 {0/10:15} B:0 3.00783 [ 4.16960] ((25 . 2) (27 . 3) (28 . 4) (33 . 14) (44 . 26) (46 . 27)) 10.204 {1/11:15} B:0 SIMILARITY (1/min{score1}): 0.6370 [and 1/min{score2}: 0.5216] [5711, 6011]: Comparing 1rwh_A and 1ug9_A, based on their crossing files. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 18 satisfy the size requirements. There are 80 (30 H + 50 S) secondary structure elements in 1ug9_A, of which 20 satisfy the size requirements. 2.25018 [ 2.50013] ((32 . 7) (33 . 8) (35 . 9) (36 . 10) (39 . 13) (46 . 19) (47 . 20) (48 . 21)) 4.818 {0/19:28} B:0 2.25023 [ 2.50017] ((31 . 4) (32 . 7) (33 . 8) (35 . 9) (36 . 10) (37 . 11) (47 . 20) (48 . 21)) 5.135 {0/11:28} B:0 3.60007 [ 4.00005] ((33 . 1) (35 . 2) (36 . 3) (38 . 4) (46 . 11)) 5.371 {0/5:10} B:0 3.60010 [ 4.00007] ((32 . 8) (33 . 9) (35 . 10) (36 . 11) (43 . 16)) 5.929 {0/5:10} B:0 3.60014 [ 4.00010] ((33 . 1) (35 . 2) (36 . 3) (37 . 4) (46 . 11)) 6.413 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6292 [and 1/min{score2}: 0.5981] -------------------------------------------------------------------------------------------------------------------------