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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1768 1g8k_B)  ( 1607 1fqt_A)     0.8181   0.9997   2.9970 (   0   29   36)   0     0.8181   0.9997   11   9
( 1768 1g8k_B)  ( 1768 1g8k_B)     1.0000   1.0000   0.0000 (   0   46   55)   0     1.0000   1.0000   11  11
( 1768 1g8k_B)  ( 2966 1jm1_A)     0.9091   0.5882   1.4425 (   0   35   45)   0     0.9091   0.5882   11  17
( 1768 1g8k_B)  ( 4440 1nyk_A)     0.9519   0.8845   3.2833 (   3   44   55)   0     0.9519   0.8845   11  12
( 1768 1g8k_B)  ( 4541 1o7n_A)     0.9087   0.7691   3.5485 (   0   35   45)   0     0.9087   0.7691   11  13
( 1768 1g8k_B)  ( 5622 1rfs  )     0.7273   0.8888   2.2474 (   0   23   28)   0     0.7273   0.8888   11   9
( 1768 1g8k_B)  ( 5644 1rie  )     0.8181   0.8998   2.8774 (   0   26   36)   0     0.8181   0.8998   11  10

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