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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2966 1jm1_A)  ( 1607 1fqt_A)     0.5294   0.9999   2.4434 (   0   30   36)   0     0.5294   0.9999   17   9
( 2966 1jm1_A)  ( 1768 1g8k_B)     0.5882   0.9091   1.4425 (   0   35   45)   0     0.5882   0.9091   17  11
( 2966 1jm1_A)  ( 2966 1jm1_A)     1.0000   1.0000   0.0000 (   0  119  136)   0     1.0000   1.0000   17  17
( 2966 1jm1_A)  ( 4440 1nyk_A)     0.5882   0.8332   2.8855 (   0   36   45)   0     0.5882   0.8332   17  12
( 2966 1jm1_A)  ( 4541 1o7n_A)     0.5882   0.7691   3.1734 (   0   39   45)   0     0.5882   0.7691   17  13
( 2966 1jm1_A)  ( 5622 1rfs  )     0.5293   0.9964   2.0115 (   1   29   36)   0     0.5293   0.9964   17   9
( 2966 1jm1_A)  ( 5644 1rie  )     0.5294   0.8999   2.2378 (   0   25   36)   0     0.5294   0.8999   17  10

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